Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00322 ATGAAAATGAGTTGCTATGGGTGCCGCATTCTCCGCAAGGGTTGCCCTGAGAACTGTGTCATAAGGCCATGCCTTGAGTGGATCAACTCTCCTGAAGGCCAATCCAACGCCACTCTCTTCCTTGCCAAATTCTATGGCCGTGCTGGCTTGCTCAACCTCATCAATGCTGCCCCAGAACCCCATCGCCGTGAGGTGTTCAAGTCACTAATGTTCGAGGCATGCGGGAGAATTGTGAACCCGACGTATGGGTCGATGGGCCTGTTTTGGACCGGAGAGTGGGCCCAGTGCGAAGCTGCAGTTAATGCTGTGATCAATGGCATGGAAGCTTCCAATTCGCAGATCACAGGGACACGTCGCAGCAATCATGTTCCCCAAATCCTTGGTATACGCCACGTGGCGAGAGATGGTGGCATGGATAGGGTGAAAGGAAAAGGCAAGGCCAAGAGGAGCGCCAAGGAGATGAAGCCGAAGCAGCGAGTTGCTGCGCCGAGCCGCGAGCCAGGAGGATCGGAGGGTAAGACTAAGAGTGAGCAAACTGTGGAGGCTTTGTTGGTGAGCCAGGACAAGCCGAGCCGAACTCGTGGAGCCGAGCTGAATTTGGAGCTCACTCTTGGCTAG 618 0.5502 MKMSCYGCRILRKGCPENCVIRPCLEWINSPEGQSNATLFLAKFYGRAGLLNLINAAPEPHRREVFKSLMFEACGRIVNPTYGSMGLFWTGEWAQCEAAVNAVINGMEASNSQITGTRRSNHVPQILGIRHVARDGGMDRVKGKGKAKRSAKEMKPKQRVAAPSREPGGSEGKTKSEQTVEALLVSQDKPSRTRGAELNLELTLG 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00322 205 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cca06g00322 205 MobiDBLite consensus disorder prediction 137 205 - -
Cca06g00322 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 205 - -
Cca06g00322 205 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Cca06g00322 205 PANTHER LOB DOMAIN PROTEIN 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00322 Cca-Chr6 8753052 8754400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00322 1 135 AS2 family AT1G68510 56.522 1.31e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca06g00322 LOB 4.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00322 - - gmx:100789066 265.003