Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00309 ATGTCATTTCATTTAACTTCGATTCTATACTTTGTTGTCCTCATCATCACCCTTTTGCCACAAAACTCTGATGGTTCCCTGAACCCAAAGTTTGAAGCTTGTGAAGCCAAAACATGTGGCAATAACCAAACCATAAGCTACCCTTTCTACATTGAAGGGATACAAGAGCCCTTTTGTGGGTACCCTGGTTTTGGCCTCTCTTGTGGCAACGATGGCTTCCCATTTCTCAACATGTCCAATGCCAAATACATGATCCACCAAATATTTTACAACAACAACTCAATGCGTGTGTCAAATGCAGTGTTTTCAACACCAAACACTAGGAGTAGTTGTCTTCGTCGTACACACAACCTCACTCTTTCGGGTACGAGGTTGGCTCTAGCTCCCAACCAAAGGGAACTTATTTTGTTGTTCGGATGTGACATGCATGGAAAAAACACAATTGGATGTTCTGAAGAAAACAAAACGAGTTCGGTTGTGGCCATGAATAGGGAAGACCAAAACTTGAGGTTTTCTTTGATGAATTGCAAGGGTGGGGTGGTGAATGTGACGGTGGAAGATGAGGTAAGAGGGGTTCAAGAAGCATTGAGAAGAGGGTTTGTGTTGATTTGGACTGTTAGTGATTGCAACAAGTGCAGAAACAGTGGAGGGAAGTGTGGCTTTAACACAGACATATTCAGTTTCAGATGTTACTGCCCTCATGATACTCATGCAAGGAAATGTTCCCAAGAAAAATCTGGAAATTCGATTGTTATATTGGCAACAGTTTTTGCTGCTGCGGGATTTGGAGTTTTAATTATTGCAGTATACTGTTTTAGAAGGAAACTACGGTTCATATTCTGGAAGGAGAAATCTAGAGCAAATCAAGATTTTGAGGTCTTTCTCAGGAATTATGGACCACTTGCTGTAAGAAGATATAGCTACATAGAAATAAAGAAAATGACCAACTCTTTCAAAGAAAAATTAGGCCAAGGAGGCTATGGAAGTGTGTTCAAAGGGAAGTTAGAAGATGAATCTCTAGTTGCCGTTAAGGTTTTGAATGAGTTAAAAGGAAATGGAGAAGAATTCATCAATGAGGTAGGAAGTATTAGCAAGACTTCTCACGTGAACATTGTCACACTCATTGGTTTTTGCTGTGAAGAATCCAAGAAAGCTTTAGTCTATGAGTTCATGGCTAATGGGTCTCTAGAGAAGTTCATATTTGAGACTAATAACTTGACAGATGATTGCCAATTGAATTGTGAAATGTTGTACCAAATTGCAATTGGTGTTGGTCGAGGACTAGAGTACTTGCACAGAGGATGCAATACTCGAATATTTCATTTTGACATAAAGCCTCACAACATATTGTTAAATGAGAACTTTTGCCCAAAGATCTCTGATTTTGGACTTGCCAAAATATGCCCCATAAATGAGAGTGTTGTGTCTATGATGACTGCTAGAGGAACAATAGGATATATTGCTCCTGAGGTATTTTGTAGAAATATTGGGGTAGTATCTCACAAATCAGATGTTTATAGTTATGGAATGATGGTGTTGGAAATGGTTGGGGGAAGAAAGAATATTAATGTTGAAGTTGATTCCACAAGTGAAATATATTTTCCTTATTGGATTTACAAACGTTTGGAACTAAATCAAGAGCTTGCACTAAGGAATGTTGTGAATGAAAGTGAAATAGAAAAGATTAAAAAGATGGTATTAGTAAGTTTGTGGTGTATACAAACTAATCCTTCACACCGTCCAACAATGCATAGAGTGGTGGAGATGCTTGAAGGGAACGTTGAAACCATACAAGTACCACCAAAACCTTTCTTATCATCTCCTTCAACATCACCACATTCTTCTCCCTCTCGTTGA 1857 0.3872 MSFHLTSILYFVVLIITLLPQNSDGSLNPKFEACEAKTCGNNQTISYPFYIEGIQEPFCGYPGFGLSCGNDGFPFLNMSNAKYMIHQIFYNNNSMRVSNAVFSTPNTRSSCLRRTHNLTLSGTRLALAPNQRELILLFGCDMHGKNTIGCSEENKTSSVVAMNREDQNLRFSLMNCKGGVVNVTVEDEVRGVQEALRRGFVLIWTVSDCNKCRNSGGKCGFNTDIFSFRCYCPHDTHARKCSQEKSGNSIVILATVFAAAGFGVLIIAVYCFRRKLRFIFWKEKSRANQDFEVFLRNYGPLAVRRYSYIEIKKMTNSFKEKLGQGGYGSVFKGKLEDESLVAVKVLNELKGNGEEFINEVGSISKTSHVNIVTLIGFCCEESKKALVYEFMANGSLEKFIFETNNLTDDCQLNCEMLYQIAIGVGRGLEYLHRGCNTRIFHFDIKPHNILLNENFCPKISDFGLAKICPINESVVSMMTARGTIGYIAPEVFCRNIGVVSHKSDVYSYGMMVLEMVGGRKNINVEVDSTSEIYFPYWIYKRLELNQELALRNVVNESEIEKIKKMVLVSLWCIQTNPSHRPTMHRVVEMLEGNVETIQVPPKPFLSSPSTSPHSSPSR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00309 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Cca06g00309 618 Pfam Protein kinase domain 318 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00309 618 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 2.4 21 603 - -
Cca06g00309 618 SMART serkin_6 316 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00309 618 Pfam Wall-associated receptor kinase C-terminal 153 233 IPR032872 -
Cca06g00309 618 Gene3D Phosphorylase Kinase; domain 1 295 390 - -
Cca06g00309 618 ProSiteProfiles Protein kinase domain profile. 316 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00309 618 MobiDBLite consensus disorder prediction 600 618 - -
Cca06g00309 618 Gene3D Transferase(Phosphotransferase) domain 1 391 599 - -
Cca06g00309 618 MobiDBLite consensus disorder prediction 599 618 - -
Cca06g00309 618 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Cca06g00309 618 Pfam Wall-associated receptor kinase galacturonan-binding 34 98 IPR025287 GO:0030247
Cca06g00309 618 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 603 IPR045874 GO:0004672
Cca06g00309 618 SUPERFAMILY Protein kinase-like (PK-like) 296 591 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00309 Cca-Chr6 8377637 8379922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00309 1 611 Receptor kinase-like Gene Family AT1G66910 40.062 2.98e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca06g00309 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00309 - - lang:109359375 1012.29