Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00307 atgAGATTCTTGGCTCCACCTGAGAAACAGGATGTTTTTCTTGGTTGGGAGAAGTTGCAACAAATTGCCTTGGGTGTTGCAAGAGGAATTGAGTATCTCCATCTTGGTTGTGATCATAGAATACTTCACTTTGACATCAATCCTCACAATGTTTCACTAGATGACGACATGGTCCCAAAAATCACTGATTTTGGACTTGCAAAGTTGTGTCCCAAAAATCAAAGTACAGTGTCTATGACTGCAGCTAGGGGAACCTTGGGCTACATTGCCCCTGAAGTTTTCTCAAGGAACTTTGGTAATGTGTCTTACAAGTCTGATATTTACAGCTTTGGGATGTTGCTGTTGGAAATGGTTGGAGGAAGAAAGAATACAAATGTATCAGCCGAGGAAAGTTTCCAAGTTTTGTACCCTGAATGGATCCATAATTTGCTTGAAGGCAGAGACGTGCAAATTAATGTTGAAGATGAGGGGGATGTTAACATTGCAAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAACCCAGTGAATCGTCCTTCAATAAAAATTGTGGTACAAATGCTTGAAGGGGATGGAGAGGAGTTAATTGAACCTCCAACTCCTTTTTCTAGAACAAACATTGTACCAGCAACACATCAAAATTTTGAGTTGGAAGTTATCCATGAAATAGAAGAGTAA 684 0.3991 MRFLAPPEKQDVFLGWEKLQQIALGVARGIEYLHLGCDHRILHFDINPHNVSLDDDMVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSFGMLLLEMVGGRKNTNVSAEESFQVLYPEWIHNLLEGRDVQINVEDEGDVNIAKKLAIVGLWCIQWNPVNRPSIKIVVQMLEGDGEELIEPPTPFSRTNIVPATHQNFELEVIHEIEE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00307 227 SUPERFAMILY Protein kinase-like (PK-like) 14 191 IPR011009 -
Cca06g00307 227 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 226 IPR045874 GO:0004672
Cca06g00307 227 Pfam Protein kinase domain 14 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00307 227 Gene3D Transferase(Phosphotransferase) domain 1 3 198 - -
Cca06g00307 227 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 226 - -
Cca06g00307 227 ProSiteProfiles Protein kinase domain profile. 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00307 Cca-Chr6 8287658 8289202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00307 9 203 Receptor kinase-like Gene Family AT1G66980 51.485 1.00e-64 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca06g00307 Pkinase 4.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00307 - - gmx:100811260 401.364