LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g00290	ATGCCTATCCCTAAAGTTGATAATCTTACATCTTTAAGGGAGTATAGGCCAATCGACTTGTGTAATGTCTTATTTAAGGACCAAAGTGTTGTCTCCATTAGTCTCCCAAAGAGGAAGCTTTATGGGGTTCTTCCCTCTCAGCTAGGGTCTCTTTCCCACCTCCGACATCTGAATTTGAGGAACAACTACCTCTTTGGCAACTTGCCTGTTGGGCTCTTTGAAGCACAGGGACTACAAAGTTTGGTGCTTTATGGCAATTCCTTTTCTGGGTCTATTCCAAATGAGATTGGGAAGCTCAGGTACCTTCAAACTCTTGATTTGTCACAGAATTTCTTCAATGGGTCTTTACCTGCTAAAATAGTCCAATGCAAGAAGCTCAGAGCACTTGTTCTTAGTCATAACAATTTCACAGGTTATCTACCAGATGGGTTTGGTGGTGGGTTGTCTTCTCTGGAGAAACTTGACCTTTCTTTCAACCAATTCGTTGGTTCAATTCCTAGTGACATGGGAAATCTGTCAAGCCTGCAAGGCACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCGATCCCAGCTAGTCTTGGTAATCTGCCTGAGAAGGTTTACATTGATCTAACTTTCAACAATTTAAGTGGTCCAATACCTCAAACTGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATTGGCAATTCTGGTCTTTGTGGCCCCCCTTTGAAGAATATGTGTGCCCCAGATACTCATGGTGCTAGTTCACCTTCCTCTTTTCCATTTTTGCCTGATAATTACCCACCTCAGGATAGTGATGATGGTTTTGGGAAAAGTGGGAAAAGTAAAAGGCTAAGTAAGGGTGCTGTTGTTGGCATCGTTGTTGGGGATGTAGTTGGAATTTGCCTTTTGGGTTTGTTGTTCTCTTATTGCTACTCAAGGGTGTGTGGTTTTACTCAGGATCAGGAGGAAAAAGGTTTTGACAAGGGAGGGAAGCTGAGGAAGGAATGCTTATGCTTTAGGAAGGATGAATCTGAGACCCTATCTGATCATGTTGAGCAGTATGATCTTGTTCCATTAGATGCTCAAGTGGCATTTGATTTGGATGAACTTCTTAAGGCTTCAGCTTTTAGTGGAATAGGGATTGTCTACAAAGTAGTGCTTGAAGAAGGGCTCACCTTGGCTGTCAGAAGATTAGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACGGAAGTTGAAGCAATAGGAAAGTTGAGGCATCCAAATATTGTTACTCTCAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATCTATGATTTTGTTCCCAATGGAAGCCTTGCTACAGCAATACATGGGAAAGCTGGACTTGCCACATTTACTCCACTTTCTTGGTCTGATAGACTGAAAATCATGAAAGGAATTGCAAAAGGATTGGTCTACCTACATGAATTTAGTCCAAAAAAATATGTCCATGGAGACTTGAAGCCTGGTAACATACTGTTAGGACAAAGCATGGAGCCCCACATTTCCGATTTCGGTCTTGGACGCCTTGCTAACATTGCTGGTGGGTCCCCAACCTTACAATCCAACCGAGTGGTCACAGAGAAATCACAAGAAAGACAGAGGAGCTTATCCACAGAAGTTTCAACCAGTCTTTTGGGAAATGGTTATCAAGCTCCAGAAACAATGAAAGTGGTGAAGCCATCACAGAAGTGGGATGTTTACTCATATGGGGTGATTCTGCTAGAGTTGATTACGGGAAGGTTGCCTATTGTCCAAGTTGGTAACTCAGAAATGGACCTTGTTCAATGGATTCAGCTCTGCATTGATGAGAAGAAGCCACTCTCAGATGTATTAGATCTGTATTTAGCTGAAGATGCAGATAAGGAAGAGGAGATCATTGCAGTTTTGAAGATTGCAATTGCTTGTGTCCATAGCAACACAGAAAAGAGACCCATAATGAGGCATGTGCTTGATGCTTTGGATAGGTTATTATGA	1998	0.4214	MPIPKVDNLTSLREYRPIDLCNVLFKDQSVVSISLPKRKLYGVLPSQLGSLSHLRHLNLRNNYLFGNLPVGLFEAQGLQSLVLYGNSFSGSIPNEIGKLRYLQTLDLSQNFFNGSLPAKIVQCKKLRALVLSHNNFTGYLPDGFGGGLSSLEKLDLSFNQFVGSIPSDMGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTFNNLSGPIPQTGALMNRGPTAFIGNSGLCGPPLKNMCAPDTHGASSPSSFPFLPDNYPPQDSDDGFGKSGKSKRLSKGAVVGIVVGDVVGICLLGLLFSYCYSRVCGFTQDQEEKGFDKGGKLRKECLCFRKDESETLSDHVEQYDLVPLDAQVAFDLDELLKASAFSGIGIVYKVVLEEGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDFVPNGSLATAIHGKAGLATFTPLSWSDRLKIMKGIAKGLVYLHEFSPKKYVHGDLKPGNILLGQSMEPHISDFGLGRLANIAGGSPTLQSNRVVTEKSQERQRSLSTEVSTSLLGNGYQAPETMKVVKPSQKWDVYSYGVILLELITGRLPIVQVGNSEMDLVQWIQLCIDEKKPLSDVLDLYLAEDADKEEEIIAVLKIAIACVHSNTEKRPIMRHVLDALDRLL	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g00290	665	PANTHER	RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1	16	664	-	-
	Cca06g00290	665	Pfam	Protein kinase domain	376	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca06g00290	665	SUPERFAMILY	L domain-like	20	240	-	-
	Cca06g00290	665	Gene3D	Phosphorylase Kinase; domain 1	373	441	-	-
	Cca06g00290	665	SMART	LRR_typ_2	148	172	IPR003591	-
	Cca06g00290	665	SMART	LRR_typ_2	99	123	IPR003591	-
	Cca06g00290	665	SMART	LRR_typ_2	124	146	IPR003591	-
	Cca06g00290	665	SMART	LRR_typ_2	51	75	IPR003591	-
	Cca06g00290	665	SUPERFAMILY	Protein kinase-like (PK-like)	375	661	IPR011009	-
	Cca06g00290	665	Gene3D	Transferase(Phosphotransferase) domain 1	442	665	-	-
	Cca06g00290	665	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	489	501	IPR008271	GO:0004672\|GO:0006468
	Cca06g00290	665	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	16	664	-	-
	Cca06g00290	665	CDD	STKc_IRAK	374	664	-	-
	Cca06g00290	665	SMART	serkin_6	362	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca06g00290	665	ProSiteProfiles	Protein kinase domain profile.	362	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca06g00290	665	MobiDBLite	consensus disorder prediction	253	279	-	-
	Cca06g00290	665	Gene3D	Ribonuclease Inhibitor	3	250	IPR032675	-
	Cca06g00290	665	Pfam	Leucine rich repeat	125	186	IPR001611	GO:0005515
	Cca06g00290	665	Pfam	Leucine rich repeat	52	110	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g00290	Cca-Chr6	7661884	7666051	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca06g00290	23	664	Receptor kinase-like Gene Family	AT2G01210	69.512	0.0	912

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Cca06g00290		Pkinase	2.1e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g00290	-		-	gmx:100810225	1141.72