Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00279 ATGGCTTCCCCTGGCAATAAGCTTTCCTTGTCCACTGCAATCCATTTCTTCAAGATTATCCTCACAAGAAGTCTTACAGATGGAAAACTTAAACTCCCAAACAATTTCACTAGAAAATATGGAGATGGAATGCCAAACCCTGTGTTTTTCAAGCCACCAGACGGCACTGAATGGAAAATATATTTGACCGAGCATGATGGTGAGATTTGGTTTCAAGATGGTTGGAAGGAGTTTGCCGCACACTATTCTCTAGATCATGGCCACTTGTTGTTCTTTGAATATGAGGAAACTTCTCATTTTGATGTCCACATATTTGACAACAGTGCCCTTGAAATAGACTATCTTTCTCATGGTACTCGTGATGGAAAGGACAATGATGTACAGATTAGTGGTGATTCTGTTAAAATTTTGGATGAGCAATGTCATGATGGAAAGGACATCGTTGTGCAGATTAGTGATGATTCTGTTGAAATTTCGGATGAAGAGCAATGTTCACGCCGAAAGACTAGAGTGAAATCCACAGCGTCATCTTCTCAACCTGATAAGAAAATGAAAAATAGCATAACTCCAGACGTTGAAAGAAGCCCCAATGGGGTAAACTTGCATCAGCATGTCAAAAGTAGAAGTACTAGCTTTCAAGATGTAAAATTTATGCAGCAAAAGTTAGATGAAGATGAGGAAGGTAAAGGAATTTTCAACAATAAATGCCCAAAAGTGGAGCAGTTAACTCCTACGGCTTTAGACAAAGCCAGAGCTTTCAAATCTAAGCATCCCTCTTTCTTGCTTGTCATAAAGCCATCTTTTATTGATGTAGATTACCTGGAAATACCGGCAATATTTTCAGAAAAATATTTGAAGAAAACACATGCAGTTGTCCTCCTTGAGATCTTGGATGAGGGAAGTTGGCCTGTTATTTGTTCTGCTCCTAGAATTACTGGCGGGTGGCAGAATTTTGCATCAGAAAATAATTTGAATGTGGGGGATGTCTGTGTTTTTGAGATGATCCAGAAGATTCAAAGCCTTGCTTTCAAAGTTTCCATCTTTCGAGGTGCAGAGGAACCAAGTAGACCCATTTCACAAGGCTGCAGAGTTGGGAGTTCAAGTCAAAGAACTTTGCAGCTGGAAAACCACTTCAAGTCAGAGATCTTAAAATCCACAGCTCTTAGAGAAGCTAGGAAATTCACATCAGAAAATCCCTTTTTCATGGTCACTTTAAAAATGCAAGGAAATACAACCAGATGCCCGCAAGTGCCAAAGGAGTTTGTCACAAAGTATTTTGTAAACATGAACCAGAAGGTGATGATGATAAAATTTAGAAAGAAATTGTGGCCTGTGACGTTTGTATTTAATGAATCTTGGGGTACTGGCGTGCTCTCTGCTGGTTGGCCCTTATTTTCAAGAGAAAATGAACTGCAACGTGGACATGTTTGTATCTTTGAGATCGTCAATAGGGAAGATGCAAAACTTGATGTTCATGTTTTCAAAGGTCACACTAAGGTAATACTTTAG 1509 0.393 MASPGNKLSLSTAIHFFKIILTRSLTDGKLKLPNNFTRKYGDGMPNPVFFKPPDGTEWKIYLTEHDGEIWFQDGWKEFAAHYSLDHGHLLFFEYEETSHFDVHIFDNSALEIDYLSHGTRDGKDNDVQISGDSVKILDEQCHDGKDIVVQISDDSVEISDEEQCSRRKTRVKSTASSSQPDKKMKNSITPDVERSPNGVNLHQHVKSRSTSFQDVKFMQQKLDEDEEGKGIFNNKCPKVEQLTPTALDKARAFKSKHPSFLLVIKPSFIDVDYLEIPAIFSEKYLKKTHAVVLLEILDEGSWPVICSAPRITGGWQNFASENNLNVGDVCVFEMIQKIQSLAFKVSIFRGAEEPSRPISQGCRVGSSSQRTLQLENHFKSEILKSTALREARKFTSENPFFMVTLKMQGNTTRCPQVPKEFVTKYFVNMNQKVMMIKFRKKLWPVTFVFNESWGTGVLSAGWPLFSRENELQRGHVCIFEIVNREDAKLDVHVFKGHTKVIL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00279 502 SUPERFAMILY DNA-binding pseudobarrel domain 11 108 IPR015300 -
Cca06g00279 502 ProSiteProfiles B3 DNA-binding domain profile. 259 351 IPR003340 GO:0003677
Cca06g00279 502 CDD B3_DNA 399 495 IPR003340 GO:0003677
Cca06g00279 502 Gene3D - 9 109 IPR015300 -
Cca06g00279 502 ProSiteProfiles B3 DNA-binding domain profile. 400 497 IPR003340 GO:0003677
Cca06g00279 502 MobiDBLite consensus disorder prediction 160 199 - -
Cca06g00279 502 SMART B3_2 402 497 IPR003340 GO:0003677
Cca06g00279 502 SMART B3_2 260 351 IPR003340 GO:0003677
Cca06g00279 502 SMART B3_2 16 108 IPR003340 GO:0003677
Cca06g00279 502 PANTHER B3 DOMAIN-CONTAINING 381 495 - -
Cca06g00279 502 PANTHER B3 DOMAIN-CONTAINING 10 349 - -
Cca06g00279 502 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Cca06g00279 502 Pfam B3 DNA binding domain 404 495 IPR003340 GO:0003677
Cca06g00279 502 Pfam B3 DNA binding domain 265 350 IPR003340 GO:0003677
Cca06g00279 502 Pfam B3 DNA binding domain 16 107 IPR003340 GO:0003677
Cca06g00279 502 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 381 495 - -
Cca06g00279 502 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 349 - -
Cca06g00279 502 CDD B3_DNA 15 106 IPR003340 GO:0003677
Cca06g00279 502 CDD B3_DNA 258 349 IPR003340 GO:0003677
Cca06g00279 502 MobiDBLite consensus disorder prediction 170 199 - -
Cca06g00279 502 Gene3D - 381 497 IPR015300 -
Cca06g00279 502 Gene3D - 240 352 IPR015300 -
Cca06g00279 502 SUPERFAMILY DNA-binding pseudobarrel domain 253 349 IPR015300 -
Cca06g00279 502 SUPERFAMILY DNA-binding pseudobarrel domain 394 495 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00279 Cca-Chr6 7255672 7259612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00279 365 495 B3 DNA Binding Superfamily AT3G18990 29.545 3.85e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca06g00279 B3 1.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00279 - - ccaj:109791753 1026.93