Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00278 ATGCTAATAGAGAATTCTTTGCAGAAGATTCCAAACAGGTTCACTAGGGAATATGGAGGTAATCTGTCAAACGCAGTGTTTCTCAAGCCTCCGGATGGCATTAAATGGGGAATTTATTGGACTAAACATGATGCTGATATTTGGTTTCAAAAGGGTTGGAAGGAATTTGCTACATATTACTCCCTAAGTCACGGACATGTGTTGTTTAAATACCAAGAAACATGTCATTTGAAGGTACACATATTTGACCGGAGTTCCCTTGAAGTAAGTTATCCCTTCTGCGGCACTCAAATTGAACATGACAACCTTGATTATGTTAGCAATGACTCTGTTGAGGTTTTGGATAACTCTGTTAATGTTTTGGATGAGGTGGCTCCAAGTCAGAAGACTGAACTGAAATCAACAATACCATGCCCACAACCACTTAAAAACTAG 435 0.3908 MLIENSLQKIPNRFTREYGGNLSNAVFLKPPDGIKWGIYWTKHDADIWFQKGWKEFATYYSLSHGHVLFKYQETCHLKVHIFDRSSLEVSYPFCGTQIEHDNLDYVSNDSVEVLDNSVNVLDEVAPSQKTELKSTIPCPQPLKN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00278 144 ProSiteProfiles B3 DNA-binding domain profile. 1 85 IPR003340 GO:0003677
Cca06g00278 144 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 141 - -
Cca06g00278 144 CDD B3_DNA 10 83 IPR003340 GO:0003677
Cca06g00278 144 Gene3D - 3 86 IPR015300 -
Cca06g00278 144 Pfam B3 DNA binding domain 6 84 IPR003340 GO:0003677
Cca06g00278 144 SMART B3_2 3 85 IPR003340 GO:0003677
Cca06g00278 144 PANTHER B3 DOMAIN-CONTAINING 8 141 - -
Cca06g00278 144 SUPERFAMILY DNA-binding pseudobarrel domain 8 85 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00278 Cca-Chr6 7249260 7249694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00278 2 93 B3 DNA Binding Superfamily AT3G18960 40.860 1.02e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca06g00278 B3 1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00278 - - ccaj:109791748 272.707