Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00235 ATGGAGAGAGATTTTCTGGGTCTGAGCTCAAAAGAAACATTGCCTGTGGTCAAGGAAGAGATGAATAATGATATTAACGGGTACAAAGATTCAGGTTTCACGAACGGTGCAGTGGTAAAATGGCCCTTCTTGAACAAAGTCTCTGTTCATCCTCATTTGATGATGTCTTTCAATGCTCCTCAGGATGATAAGGCTAAATTCATGGTGTCTGATTTGCTCGCTAAAAAACGTTTTTCCGGTGAACCACAGAAATCTTTCAATCATGATGGACAAGGTGGCATTCATTTTTCCCTGACTCCATATCATGTGCAACATGATGTGAATTCTGTGAATCGCCCTCATGATGTAAAGATGTTTTCAGTTCCCAATCAAGCAATTTCAGTTTCCATGGCACACCCTTCCCTAAAGAATCATTTTGCAACTGTTGGTCAGAATATGAATGGTGCTGGTGTGAAGCAACCACTACTTGGGGGAATACCTGTTACAGTGCCTCATGCAGTTCATCCCATTCTTCCTGTCGGTGGTGCTGTTGCTGGATTGACTGAAACATGTGTGAAACCATTTGTGTCTGCTCCCAAACTTACAATCTTCTACGCGGGCACTGTGAATGTCTTTGATGATATCTCCCCTGAGAAGGCCCAAGCTATCATGCTGTTGGCTGGGAATGGCTTATCAGCTGCTTCTAACATGGCACACACACAGTCCAATGTTCCGGTGCACGGCTTGAAGTTGGCTGTAGGTGATGGTGTGCATTCAGGGAGTGGTTCAAGTAGCAATGATGACAAAGTTGAGACTCCAAAAGTTGTCAACGCGACCACAATGTTACCCTCAGCTGTGCCACAGGCTCGCAAGGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATGCAGCACCATATAACCTCAAACAAGACGTCTGA 933 0.448 MERDFLGLSSKETLPVVKEEMNNDINGYKDSGFTNGAVVKWPFLNKVSVHPHLMMSFNAPQDDKAKFMVSDLLAKKRFSGEPQKSFNHDGQGGIHFSLTPYHVQHDVNSVNRPHDVKMFSVPNQAISVSMAHPSLKNHFATVGQNMNGAGVKQPLLGGIPVTVPHAVHPILPVGGAVAGLTETCVKPFVSAPKLTIFYAGTVNVFDDISPEKAQAIMLLAGNGLSAASNMAHTQSNVPVHGLKLAVGDGVHSGSGSSSNDDKVETPKVVNATTMLPSAVPQARKASLARFLEKRKERVMNAAPYNLKQDV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00235 310 PANTHER PROTEIN TIFY 7 267 307 - -
Cca06g00235 310 PANTHER PROTEIN TIFY 7 14 247 - -
Cca06g00235 310 Pfam Jas motif 280 304 IPR018467 -
Cca06g00235 310 SMART tify_2 187 222 IPR010399 -
Cca06g00235 310 Pfam tify domain 192 221 IPR010399 -
Cca06g00235 310 ProSiteProfiles Tify domain profile. 187 222 IPR010399 -
Cca06g00235 310 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 267 307 IPR040390 -
Cca06g00235 310 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 14 247 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00235 Cca-Chr6 6007835 6011365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00235 39 308 Tify Gene Family AT3G17860 34.056 2.07e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Cca06g00235 tify 4.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00235 K13464 - gmx:100787821 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00235 06 6007835 6011365 Cca06g00235 06 6007835 6011365 ECH