Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00234 ATGAAGAATCACGCGTTTCGCACCCTCTTCCTCTCCACCATTGTCCTCCTCATCTCCGGCGCAAGGGCAAAGTGTCCACCCTCCTTCGACTGCGGCAACCTCGGCACCATGCACTTCCCCTACACCGACACCAAACACCCTCTCTGCGGCCTGCTGGTCATACACGGTTGCGGCGACCGCGACCCCGACGCCATCAAAACCATCAAAAACAAAGGAACATGGTTCTACATCACGCGCGATCACGACACCGTTTTGTTCAGGGACGATGACCTCCGCACGCTCCTGCTGTCCAGAAGGTGCGGCGTCTTCAGCACCAACTACACCGGCTTGGACACCACCTCGCCTTTCCTTTCGCTCCGTTTCACGAACGTTACGCTGTTCAGATGCAACCGCGCGCTCAGCGTCACGCCGTCTTCGAACTCGTCGTTTTCCAAGTCTACGACGTGCCCCGATGATGACATCTTCTACGACACGGCTAATACTACTGCGGATGATGAGTCTCTGAGTTATTCTGAATTTGAAGCGTGTTCGATGGTTCGGCTTCCGATCAGAGATGCGGGGCTTGTGCCTAACCCCGATGGAAGCCTCTTTGAATACGTGTCAGCTGATATTCCTGTCCGTGTGGAGGTGTCGCGTGATTGTTCTTCTTGTTACTATCTTAGCGGGGGGCGGTGTCAACTTGATAACCAAGGGAAGTTCTTTTGTGCACAAGAGAAAGCTAGTGAAAAGGTGAAGATAGTGGTAGCAGCTACTTCTGTTGGTGGAGCACTGGGAATTTTGATGGTCTTGGCTTGCATCTTACGAAGATACTGTGGCCACAAGGAGAATCCCACTTACCTGATGATTGAGAATTTTCTGAAGCAACATGGCCACCTTTCAGCCAAAAGGTACAGTTATTTGGAAGTAAAGAAAATGACCAACTCCTTCAGATACAAATTAGGCCAAGGAGGGTATGGTAGTGTATACAAAGGGAGGTTACAAAATGGAAGTCTTGTGGCAGTGAAGATTTTAAGTAAATTAAAAGGTGATGGAGAAGAATTCATCAATGAAGTTGCTAGCATTAGCATGACTTCTCATGTTAACATTGTCAGTTTACTAGGATTTTGTCTTGAAGGCTTCAAAAGAGTTCTCATATACGAGTATATGCCCAATGGATCTCTTGAAAAGTTCATATATGAAGAGAAAGATCCTTTGAGGCTTAAACTCACATTGAACTGCAGAACTATGTACAATATTTCCATTGGTGTTGCTAGAGGATTAGAGTATTTGCATAAGGGTTGTAACACTAGAATCTTGCATTTTGACATTAAACCTCACAATATACTGCTAGATGAGTTGTTTGGCCCCAAAATATCAGATTTTGGGCTTGCTAAAATATGTCCAAGAGAAAAAAGTACTATATCAATGCTGGTTGCAAGGGGAACTGTAGGATATATTGCTCCTGAATTGTTCTGCAGAAATTTTGGTGGAGTGTCACATAAATCAGATGTCTATAGTTATGGAATGATGGTCTTGGAAATGCTTGGTGCAAGAGAGATTAATACTAATGGCAGAGTTGATTTTTCAAGTGAAAATTACTTTCCACATTGGATTTACAGCCATCTTGAATTAAACCAAGAGTTTCAATTGCGATGTATTAAAAACCAAAGTGATAAAGAAATGGTGAGAAAAATGACAATAGTGAGTTTGTGGTGCATACAAACCGACCCTTCCAATCGACCTGCAATGAGTAAAGTGGTGGAAATGATGGAAGGAAACATTAGCTCGTTGCAAATTCCACCCAAACCTTTCCTTTCTCCATCCTTGGCATATTCTTCCCCTGAATCACAAACAATAGAGACATCATAG 1848 0.4426 MKNHAFRTLFLSTIVLLISGARAKCPPSFDCGNLGTMHFPYTDTKHPLCGLLVIHGCGDRDPDAIKTIKNKGTWFYITRDHDTVLFRDDDLRTLLLSRRCGVFSTNYTGLDTTSPFLSLRFTNVTLFRCNRALSVTPSSNSSFSKSTTCPDDDIFYDTANTTADDESLSYSEFEACSMVRLPIRDAGLVPNPDGSLFEYVSADIPVRVEVSRDCSSCYYLSGGRCQLDNQGKFFCAQEKASEKVKIVVAATSVGGALGILMVLACILRRYCGHKENPTYLMIENFLKQHGHLSAKRYSYLEVKKMTNSFRYKLGQGGYGSVYKGRLQNGSLVAVKILSKLKGDGEEFINEVASISMTSHVNIVSLLGFCLEGFKRVLIYEYMPNGSLEKFIYEEKDPLRLKLTLNCRTMYNISIGVARGLEYLHKGCNTRILHFDIKPHNILLDELFGPKISDFGLAKICPREKSTISMLVARGTVGYIAPELFCRNFGGVSHKSDVYSYGMMVLEMLGAREINTNGRVDFSSENYFPHWIYSHLELNQEFQLRCIKNQSDKEMVRKMTIVSLWCIQTDPSNRPAMSKVVEMMEGNISSLQIPPKPFLSPSLAYSSPESQTIETS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00234 615 Pfam Protein kinase domain 312 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00234 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Cca06g00234 615 SUPERFAMILY Protein kinase-like (PK-like) 290 583 IPR011009 -
Cca06g00234 615 Gene3D Phosphorylase Kinase; domain 1 283 381 - -
Cca06g00234 615 SMART serkin_6 307 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00234 615 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 31 612 - -
Cca06g00234 615 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Cca06g00234 615 Gene3D Transferase(Phosphotransferase) domain 1 382 591 - -
Cca06g00234 615 ProSiteProfiles Protein kinase domain profile. 307 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00234 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 31 612 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00234 Cca-Chr6 5940439 5943420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00234 11 606 Receptor kinase-like Gene Family AT5G38260 38.574 3.11e-127 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca06g00234 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00234 - - gmx:100807312 997.267