Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00207 ATGATCATAGCATCAACAGTTTGTTCAACAATTTTGGGAGTTGCAATTTTTATTATCATAATCTACCGCATGAGAAGGAGATTAGGGAAGGATAAATCTAAAGTTCATAAAGATTTTGAGGGCTTTCTCAGGAATCAAGGACCACTTGCAATAAGAAGGTATAGTTACTCAGATATAAAAAAGATGACCAACTCTTTTGCAGAAAAATTAGGCCAAGGAGGATTTGGAAGTGTTTACAAAGGTAAGATACATGATGATCGTCTAGTTGCTGTGAAGGTGTTGAATAGCTCCAAAGGTAATGGAGAGGAGTTCATGAATGAGGTTGGAAGCATTAGTAGAACATCCCATGTTAACATTGTCACACTATTGGGGTTTTGTTTTGAAGGATCTAAGAGATCACTAGTGTATGAATTCCTACATAATGGATCTTTGGAAAAGTTCATATATGGAACCAATGTGACCAAAGTAGAGAATCAATTGAATTGTGAAACACTATACAGAATTGCGATTGGTGTTGCTCAAGGATTGGAATATTTGCACAAAGGGTGTAATACCAAAATATTCCATTTTGACATAAAGCCTCACAATATACTCTTGGATGAGAACTTTTGTCCTAAGATATCAGATTTTGGGCTTGCTAAAATTTGTCCTAGTAATGAGAGTGTGGTATCCATGATGATAGCTAGGGGAACTCCAGGATACATTGCTCCTGAGGTATTTTCAAGAAACTTTGGAAGGGTCTCTCACAAGTCAGATGTCTATAGTTTTGGAATGATGGTATTGGAAATGGTGGGAGGGAGAAAGAATATTAATGTTGAAGTTGAAAATACTAGTGAACTTTATTTTCCTTCTTGGATTTATAAGCGTGTAGAATTGAATGAGGATCTTGCACTTAGGAACATTACCAATGAAAGTGAGAGAGAGATGATGAGAAAGATGGTTATAGTAAGCTTGTGGTGCATCCAAGTTGATCAGTTAGACCGTCCAACAATGCATGCAGTGGTGGAGATGCTTGAAGGGAGAGTTGAGACCTTGCAAGTACCACCTAAACCGTTCTTGTAA 1062 0.3719 MIIASTVCSTILGVAIFIIIIYRMRRRLGKDKSKVHKDFEGFLRNQGPLAIRRYSYSDIKKMTNSFAEKLGQGGFGSVYKGKIHDDRLVAVKVLNSSKGNGEEFMNEVGSISRTSHVNIVTLLGFCFEGSKRSLVYEFLHNGSLEKFIYGTNVTKVENQLNCETLYRIAIGVAQGLEYLHKGCNTKIFHFDIKPHNILLDENFCPKISDFGLAKICPSNESVVSMMIARGTPGYIAPEVFSRNFGRVSHKSDVYSFGMMVLEMVGGRKNINVEVENTSELYFPSWIYKRVELNEDLALRNITNESEREMMRKMVIVSLWCIQVDQLDRPTMHAVVEMLEGRVETLQVPPKPFL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00207 353 ProSiteProfiles Protein kinase domain profile. 64 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00207 353 Pfam Protein kinase domain 67 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00207 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cca06g00207 353 SMART serkin_6 64 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00207 353 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Cca06g00207 353 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 12 352 - -
Cca06g00207 353 Gene3D Transferase(Phosphotransferase) domain 1 139 347 - -
Cca06g00207 353 Gene3D Phosphorylase Kinase; domain 1 43 138 - -
Cca06g00207 353 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 352 IPR045874 GO:0004672
Cca06g00207 353 SUPERFAMILY Protein kinase-like (PK-like) 47 339 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00207 Cca-Chr6 5019859 5022246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00207 9 353 Receptor kinase-like Gene Family AT4G18250 54.802 2.93e-126 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca06g00207 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00207 - - lang:109359375 524.628