Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00201 ATGGATCACCGCAGCTCCAAACCCTCTTCAAATTCAAACCAAGTTCTCAGGGAGAGAGAAGGCGGAAAGGAGGATCCCAGTGCAGCACGAAAGGTTCTCAAGGCAGACCGCGAGAAACTCAGAAGGGATCGACTCAATGAGCACTTCCAAGACTTGGCAAACACGTTAGATCCTGATAGACCAAAGAATGACAAGGCAACTATCCTCACCGAGACCATCCAAATGCTAAAGGACTTAACCGCCGAAGTTAATAAGCTTAAAACAGGGCATAAAGCACTTTCTGAAGAATCACGTGAACTAATGCAAGAAAAGAATGAACTCAGAGAAGAGATGACATCTATAAAATCTGATATAGACAATCTTAATGCCCAGTACCAGCAGAGGGTGAGAATCATGTTCCCATGGGCTGCAATTGACCATTCTGTTGTCATTAGTCAACCTTACTCGTATCCAGTTCCTATTCCTATCCCTCCTGCTCCAATTTCCATCCACCCTTCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTGGTCCCATGGCTAATCCTTGTCCAATGTATGTCCCATATTCAACTCCAACTAATCCACCAGTTGAGCTGCCATCAGCTCTGTGTGCTTCCACGTCCCACGTGTCGAACCATAAAGAATCCCGAAGCAAGTCACCAGCTCATGGAAGGCCCGGTGATGCTGAAAGGTGTAGTGAGTCCCATGATGTGGCCACAGAGCTTGAACTTAAGATGCCTGGATCATCATCAACACAACAGGATTGCATTTCTGGAGGAAGGAAGGGCAAGCATTCAGTTATGAAAAACAGAACAATCCTAGGTGGGAGTGCTTCAAGTCAGTATTCTTCGTCTCAAGGACTTCAGGATAGCTCCAACAGCGTGGGTGACATCCCAAAGACTGATAATTGA 918 0.4575 MDHRSSKPSSNSNQVLREREGGKEDPSAARKVLKADREKLRRDRLNEHFQDLANTLDPDRPKNDKATILTETIQMLKDLTAEVNKLKTGHKALSEESRELMQEKNELREEMTSIKSDIDNLNAQYQQRVRIMFPWAAIDHSVVISQPYSYPVPIPIPPAPISIHPSLQPFPFFGNQNPGPMANPCPMYVPYSTPTNPPVELPSALCASTSHVSNHKESRSKSPAHGRPGDAERCSESHDVATELELKMPGSSSTQQDCISGGRKGKHSVMKNRTILGGSASSQYSSSQGLQDSSNSVGDIPKTDN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00201 305 MobiDBLite consensus disorder prediction 1 30 - -
Cca06g00201 305 MobiDBLite consensus disorder prediction 214 243 - -
Cca06g00201 305 Gene3D - 28 129 IPR036638 GO:0046983
Cca06g00201 305 PANTHER TRANSCRIPTION FACTOR BHLH11 6 304 - -
Cca06g00201 305 MobiDBLite consensus disorder prediction 274 305 - -
Cca06g00201 305 MobiDBLite consensus disorder prediction 247 261 - -
Cca06g00201 305 PANTHER TRANSCRIPTION FACTOR BHLH121 6 304 IPR044579 GO:0003700|GO:0055072
Cca06g00201 305 SMART finulus 35 85 IPR011598 GO:0046983
Cca06g00201 305 Coils Coil 76 124 - -
Cca06g00201 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 99 IPR036638 GO:0046983
Cca06g00201 305 Pfam Helix-loop-helix DNA-binding domain 30 79 IPR011598 GO:0046983
Cca06g00201 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 29 79 IPR011598 GO:0046983
Cca06g00201 305 MobiDBLite consensus disorder prediction 208 305 - -
Cca06g00201 305 CDD bHLH_AtILR3_like 34 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00201 Cca-Chr6 4911628 4914718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00201 28 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 54.978 8.69e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00201 HLH 9.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00201 - - gmx:100818281 416.772