Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00193 ATGAATCGTTTACCAAAAAGAGATTGGCTTGGAACCCTTTTAAAGAGCAGCTTTGGATGCTGTGAAGAACACAAAGACATTAGGTTTAATGAGAAGAATGTGTTCTGCATAGATTGCGTAGCTGGATTGTGTCGGCACTGCAAGGAAGCTCATTCCCTCCATCGAAGGTTTCAGATATACAAATATTCCTATCAAGATGTTGTGCGCCATTCTGAACTTCAGAAGTATTTTGATTGCTCAAATATCCAGACTTACGTGTCCAATAATGAAAAGATTGTGCATCTCAGACCCCGGACTTCATCCAAAGAATTCAAGCTAGCAAGAAGATCCAAGTTTGATACTCATCTATTCTCTGAATCTAGTGCCAAAGAAGCCAAAGTAACAACACCTCCAAAGTGGGGTGCTACTTGTGAAGAATGTGGAAAGCATCTACAAGATGAGCGCAATCGATTCTGCTCCATTACGTGCAAGATCTCAGTGCTTCCACAAGATCAAGGTCATTCTATAAAGAAAAATCTCAATGCACAAAGGATTCCGGAGGAGGGTGTTAACCAACATGATAACCCAAACTCAGAAACTGAGTCATCTATCTCTGTGGCCGAGACATATGAATGCTTTGAAGTTGTGAATTTCAGAAAGCGCCCAAGGAAAGCCACCCCTCAGAAATCATGTCATTTTGTCTTCACTTATTGA 693 0.4098 MNRLPKRDWLGTLLKSSFGCCEEHKDIRFNEKNVFCIDCVAGLCRHCKEAHSLHRRFQIYKYSYQDVVRHSELQKYFDCSNIQTYVSNNEKIVHLRPRTSSKEFKLARRSKFDTHLFSESSAKEAKVTTPPKWGATCEECGKHLQDERNRFCSITCKISVLPQDQGHSIKKNLNAQRIPEEGVNQHDNPNSETESSISVAETYECFEVVNFRKRPRKATPQKSCHFVFTY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00193 230 Pfam PLATZ transcription factor 61 158 IPR006734 -
Cca06g00193 230 ProSiteProfiles Zinc finger B-box type profile. 21 59 IPR000315 GO:0008270
Cca06g00193 230 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 222 - -
Cca06g00193 230 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00193 Cca-Chr6 4675458 4677358 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Cca06g00193 PLATZ 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00193 - - gmx:100820425 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00193 06 4675458 4677358 Cca06g00193 06 4675458 4677358 ECH