Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00190 ATGTCTCTTAGTAGCTATTGTTTATGTCTCTTTCTTTTGGTGGGTTTAGGAGTAGAATTTGCACATGCTAATTACAATGATAATGGTTATGGtcatcatcaacatcaacatcatcaccgtcatcgtggtcgtcatGCCCGCGATATCAAAAAAAATCCTGTAAATACAGCAGCTTCTCATTACCAGACAGTCATCGTGGATCCATCTGGGCATGGAAACTTCTCTACAATACAATCTGCTATTGATTCTGTCCCTTCCAATAACCAGTATTGGGTTTCCATCCACGTGAAAGCAGGCACCTACAAGGAAAAGTTGCTTATCCCTTATGACAAGCCATTTGTCGTATTAAAAGGAGAGGGACAAAAGAGAACTTTTGTTGAATGGCAAGATCATGAATCAATTGCACAGAGTCCTACATTTGCAAGCATGGCTAACAATGTCGTTGTCAAGTCTATTACTTTTAAGAATACATACAATGATTACAAAACTGCTCAGAACATGGAACCTGCGGTGGCTGCAATGATAAGCGGCGACATGTCATACTTCTATGATGTTGGGTTCTATGGTTTGCAAGACACTTTGTGGGATGATCGAGGAAGACATTACTTCAAGTCTTGCACCATTGCAGGTGCTATGGATTTTATCTTTGGCACTGCCCAATCTATATACGAGCAATGTACCATATCCGCTATTGATGCAAATCTAGGTCCTGCCATCCGTGGTTTTATCACAGCACAAGGGAGAGAAAATCCAAACGACACAAATGGGTTTGTTTTCAAGAGTTGCACTATTGTCGGAAATGGTACAACTTACTTGGGAAGACCATGGAGAGGTTATGCTAGAGTTCTTTTCTACAACAATATGATGTCCAACATTATTATTCCAGAAGGTTGGGTACCATGGAATTTTGCTGGGAATGAGGGTGGCATAACATTCGCAGAGTATGGAAATTCTGGACCTGGTGCTGACAAATCCAAGCGAGTAAGTTGGATGAAGAATTTGGATTCAGAAACCATCAATATGCTGGCAAGTACGAGCTTCATTGACAAAGAAGGTTGGATCAAGATCGAACAACAGTTCTAA 1083 0.3906 MSLSSYCLCLFLLVGLGVEFAHANYNDNGYGHHQHQHHHRHRGRHARDIKKNPVNTAASHYQTVIVDPSGHGNFSTIQSAIDSVPSNNQYWVSIHVKAGTYKEKLLIPYDKPFVVLKGEGQKRTFVEWQDHESIAQSPTFASMANNVVVKSITFKNTYNDYKTAQNMEPAVAAMISGDMSYFYDVGFYGLQDTLWDDRGRHYFKSCTIAGAMDFIFGTAQSIYEQCTISAIDANLGPAIRGFITAQGRENPNDTNGFVFKSCTIVGNGTTYLGRPWRGYARVLFYNNMMSNIIIPEGWVPWNFAGNEGGITFAEYGNSGPGADKSKRVSWMKNLDSETINMLASTSFIDKEGWIKIEQQF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00190 360 PANTHER PECTINESTERASE 10-RELATED 56 356 - -
Cca06g00190 360 SUPERFAMILY Pectin lyase-like 63 356 IPR011050 -
Cca06g00190 360 ProSitePatterns Pectinesterase signature 1. 88 107 IPR018040 -
Cca06g00190 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 56 356 - -
Cca06g00190 360 Pfam Pectinesterase 64 349 IPR000070 GO:0030599|GO:0042545
Cca06g00190 360 Gene3D - 57 359 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00190 Cca-Chr6 4603539 4607909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00190 62 307 Carbohydrate Esterase AT2G19150 46.559 7.54e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00190 - - gmx:100812950 463.766