Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00179 ATGACTGTGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCGTTGGCAACTTATCCGGAGGATGCTTCAGATCGATGGGAGAAGATTGCGGCTGATGTGCCGGGGAAGACTATAGAAGATATCAAACAGCATTATGAGCTCTTGGCTGAGGATATTAACCAGATTGAATCCGGTTGTGTGCCTCTACCATCCTATAATTCTTCTTCAGAGGGTTCAGCAAGCCATGCTAGTGATGAAGGAGCTGGCAAGAAAGGTAGTGGTCTTGGAAATTATAACAGTGAATCTAATCATGGAAATAAGCCTTCAAGATCAGATCAGGAACGGCGAAAGGGGATTGCTTGGACAGAGGATGAACACAGGCAAGTTGGTTATTTCTTATGCCTTGTATAG 417 0.4436 MTVDEVDSSSEWSREQDKAFENALATYPEDASDRWEKIAADVPGKTIEDIKQHYELLAEDINQIESGCVPLPSYNSSSEGSASHASDEGAGKKGSGLGNYNSESNHGNKPSRSDQERRKGIAWTEDEHRQVGYFLCLV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00179 138 MobiDBLite consensus disorder prediction 68 84 - -
Cca06g00179 138 PANTHER TRANSCRIPTION FACTOR DIVARICATA 7 130 - -
Cca06g00179 138 MobiDBLite consensus disorder prediction 109 123 - -
Cca06g00179 138 CDD SANT 11 57 IPR001005 -
Cca06g00179 138 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Cca06g00179 138 SMART sant 8 60 IPR001005 -
Cca06g00179 138 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Cca06g00179 138 PANTHER TRANSCRIPTION FACTOR KUA1 7 130 - -
Cca06g00179 138 MobiDBLite consensus disorder prediction 68 123 - -
Cca06g00179 138 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Cca06g00179 138 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
Cca06g00179 138 Gene3D - 5 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00179 Cca-Chr6 4187646 4188062 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca06g00179 Myb_DNA-binding 1.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00179 - - ccaj:109792793 255.373