Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00178 ATGAGGATTTTACTCCCTTCTCAGGCCTTAAGCAAAAAGCCAGGGCTTTTGCACAATTCCCACCTTCTGTTTCAAACAGAGTCACCTTTTCTCAACTCTGAAGGATGCCCATTCACTGTTGTTAGAGACACTCTTTTTTCCAGCCATTTTCTAGCATTCTCTTCAGTTGCTGGCTGCATTTTGTCTCTGTTCCCATACAACTTTTTGGCCGCCTTTGTTCTTTTACTAAGCCTTTTCTATTGGCATTGGGGAGGTCCCACTATTTGGGTGAAGCCAGGGAGATCCCCCACAAGGATGCCTAGAGGGGAAGGAAAGGGAATTGGTGCATTAGGATTTAGGATTGAACCTCGTGTGGTGAGCACATCAAATACACCATATGCCACAAAGCCTATGGGCTGTGACGTTGATTTGGTTTATCTATTTTCTGTTCTCCAGTTTATGGTTCTTAGAGCATGCAACTCCTTGGTTATTACTCCAGATAATCCTGGAGCCTACAAATTGTGCTTTCATGGTGGCTTGAGGTTATTTCTTCTGGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGCATATCAAGGAACTTTGTGGTAACAAGAACACCTACTCAAGTAGCTAGCCATGCCCAGAAATACTTCATTCGTTTGAACTCGATGAACAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGTGTTAACAATGGAGACATTTCAGCGCCTCAAGGACCGATTACCGGTCAAACGAATGGTTCTGCCGGAAATTCTACTTCCAAAGCAGCAAAACAAGCCACTACAGCATCAACTGGGGTGCCTGGTGTTGGAATATATGCTGCTCCTACCATTGGACAACCTATAGGAGGACCCTTAGTATCTGCTGTTGGCACCCCAGTGAATCTTCCTGCTCCTCCACACATGGCATATGGTGTCCGGGCCCCATATCAAGGAACTTTGTGGTAA 960 0.4521 MRILLPSQALSKKPGLLHNSHLLFQTESPFLNSEGCPFTVVRDTLFSSHFLAFSSVAGCILSLFPYNFLAAFVLLLSLFYWHWGGPTIWVKPGRSPTRMPRGEGKGIGALGFRIEPRVVSTSNTPYATKPMGCDVDLVYLFSVLQFMVLRACNSLVITPDNPGAYKLCFHGGLRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSAGNSTSKAAKQATTASTGVPGVGIYAAPTIGQPIGGPLVSAVGTPVNLPAPPHMAYGVRAPYQGTLW 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00178 319 Gene3D - 173 218 - -
Cca06g00178 319 Pfam Myb-like DNA-binding domain 175 212 IPR001005 -
Cca06g00178 319 PANTHER TRANSCRIPTION FACTOR SRM1 174 317 - -
Cca06g00178 319 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 174 214 IPR006447 GO:0003677
Cca06g00178 319 CDD SANT 181 212 IPR001005 -
Cca06g00178 319 SUPERFAMILY Homeodomain-like 174 217 IPR009057 -
Cca06g00178 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 216 IPR017930 -
Cca06g00178 319 MobiDBLite consensus disorder prediction 229 264 - -
Cca06g00178 319 PANTHER TRANSCRIPTION FACTOR KUA1 174 317 - -
Cca06g00178 319 MobiDBLite consensus disorder prediction 223 264 - -
Cca06g00178 319 ProSiteProfiles SANT domain profile. 174 216 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00178 Cca-Chr6 4177469 4184185 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca06g00178 Myb_DNA-binding 3.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00178 - - ccaj:109792793 281.182