Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00153 ATGGGTTCTGTTCCTGCAGAACTAAGCCTAGATTTGAGACCCACTTTTGTTCCAAAAACCATCACTGATTTTCTCTGCCACCTTTCCACCACCCCAAATGCATCTCACAAGAAGTCCTTGCTCGATGACTTTGTCCACAGATTGGAACTTGAATTGGCCAAGATTCAAGCATTCAAACGCGAACTTCCTCTCTGCATATTCCTCTTAAATGATGCAATTTCAGCTTTGAAGGGGGAATCAGCAAAATGCAGGGAGCAGAGGACTGAACCAGTGTTGGAAGAGTTCATTCCCCTGAAGAAAAGGTGTGATCAGATGGAGGAAATTGAGAAGGAGAAGGAATGCAGGGATAAGAGGAATTGGATGAGTTCTTTTCAGCTTTGGAACAGtaatgataataataataataataataataaAAATGCATATGACTGTGACAAAAGACAACACTATATACTAGAAAACAAGAATGATGGAGAAGAAAGACAACCTGTGGCCAAGGACTTGTTCCAATATTGtggaaatggaaatggaaatggaaatggaGGGAGTGGCTTTGTTATGCCTTTTTCTACATACATTGCAACAAAGGAAGATAAGGAAGATTGTGTTGTCAATGGACTTTCTCTTCAGACACCTGGAACTGCAGTGAATAACACAATGGAGGGATCTGATTCCAGAAGCATCTCTTGCAGGGTGGTTTCCTCCACTCCTTCAccgccaccgccgccgccgcctcagctgcAAAGTGCCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATAACTGCTTTGTTAAGGCTTTACAGGAGCTTGGAGGTTCTGAAGTAGCCACTCCAAAGCAAATTAGGGAAATGATGAGGGTTGATGGCCTGACCAATGATGAAGTAAAGAGTCATTTGCAAAAATTCCGACTTCATATTCGGAGAGGTCCACTTGCTACAGGTGCAACTTCTGTTGGAGGATTGTGGAGGCAAAGTGACTTCTTCAAGGGCACCAGTTCTGATTCTCCTCAAGGCCCTCTTCAGTTAGCTACACAATCTGGTGAAGGGACATCCCGAACTGAAGGTGACAATCTCATAGATGATGATGTAAAATCGGAGTTATAG 1110 0.4054 MGSVPAELSLDLRPTFVPKTITDFLCHLSTTPNASHKKSLLDDFVHRLELELAKIQAFKRELPLCIFLLNDAISALKGESAKCREQRTEPVLEEFIPLKKRCDQMEEIEKEKECRDKRNWMSSFQLWNSNDNNNNNNNKNAYDCDKRQHYILENKNDGEERQPVAKDLFQYCGNGNGNGNGGSGFVMPFSTYIATKEDKEDCVVNGLSLQTPGTAVNNTMEGSDSRSISCRVVSSTPSPPPPPPPQLQSARKQRRCWSPELHNCFVKALQELGGSEVATPKQIREMMRVDGLTNDEVKSHLQKFRLHIRRGPLATGATSVGGLWRQSDFFKGTSSDSPQGPLQLATQSGEGTSRTEGDNLIDDDVKSEL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00153 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 309 IPR017930 -
Cca06g00153 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 368 IPR044787 GO:0003700|GO:0006355
Cca06g00153 369 MobiDBLite consensus disorder prediction 215 253 - -
Cca06g00153 369 MobiDBLite consensus disorder prediction 329 355 - -
Cca06g00153 369 Pfam Myb-like DNA-binding domain 254 303 IPR001005 -
Cca06g00153 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 252 307 IPR006447 GO:0003677
Cca06g00153 369 MobiDBLite consensus disorder prediction 329 369 - -
Cca06g00153 369 MobiDBLite consensus disorder prediction 215 234 - -
Cca06g00153 369 PANTHER TRANSCRIPTION FACTOR HHO6 7 368 - -
Cca06g00153 369 SUPERFAMILY Homeodomain-like 250 310 IPR009057 -
Cca06g00153 369 Gene3D - 251 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00153 Cca-Chr6 3514908 3517584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00153 6 324 G2-like Transcription Factor Family AT2G03500 37.500 7.56e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca06g00153 Myb_DNA-binding 1.1e-05 CL0123