Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00143 ATGCTCGAAAAAAAACCCTATCCCATTCTCCCAAATCTGTTCTCCTCCGCAAACTTGAATCTCCTCAACGAGCTTAACGCGGCGCAGCGCGAGGACACCGTCAAGTCCCTCGCCTACGAGGCGGAGGCGCGTCTCTGGGACCCTGTGTACGGCTGCGTCGGCCTCATTTCCATCCTCCAGCACAGCCTCAAGCAGCTCTAG 201 0.5771 MLEKKPYPILPNLFSSANLNLLNELNAAQREDTVKSLAYEAEARLWDPVYGCVGLISILQHSLKQL 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00143 66 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 65 - -
Cca06g00143 66 ProSiteProfiles LOB domain profile. 1 66 IPR004883 -
Cca06g00143 66 Pfam Lateral organ boundaries (LOB) domain 10 66 IPR004883 -
Cca06g00143 66 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 16 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00143 Cca-Chr6 3328796 3330066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00143 13 66 AS2 family AT5G66870 70.909 4.89e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca06g00143 LOB 9.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00143 - - ccaj:109794140 101.679