Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00137 ATGGATCACCATTGTTCAAACAAGGCCTTGGGTTGTTATCTTTTATTTACCATTTTTGTTTCTGTTTTTTCAACCCATAGTTGTGCTCAGGATGTTCCCGAAGAATTTATCTTCCCGGAACCACTCCCAGAGAATAATGATGCTTTATTAGCACCAGCACCAGCTCCAGAATCAAGTACAAGTTTTGCAAATGAGAGGCTCAGAAAGGCACATGTTGCTCTTCAAGCATTCAAACGGGCTATTTACTCTGACCCTTCAAACATAACCGGGAATTGGGTTGGTGAAGATGTTTGCTCCTACAATGGTGTGTTTTGTGCTCCTGCACTTGACGACCCCACAGTGAATGTGGTTGCTGGTCTTGATCTCAACAATGCAGACATTGCAGGTCGCCTCCCAGAGGAGTTGGTCCATTTGACAGATATTGCCCTTCTCCATATTAACTCCAACAGATTCTGTGGAATTGTCCCAAACATCTTGGAGAATTTCACACTCATGCACGAGTTTGACATTAGCAATAATCGCTTTGTGGGTGGTTTTCCTTCTGTGGTCCTCAAGTGGCCAAACTTGAAGTACTTGGACATCAGATTCAACGACTTTGAAGGACCCCTACCTCCGGAGCTATTTGAGAAGGATCTTGATGCAATCTTCTTGAACAACAACCGTTTCACATCTAAGATCCCGGACACTCTAGGAAAATCCAATGCCTCCGTGGTGACCTTTGCCAACAACAATTTCAAGGGTTGCATTCCCACGTCAATTGGGGAGATGAAGAACATGAACGAGGTTGTGTTCATGGGAAGTGGCCTTGGAGGGTGCTTGCCAAAGGAGATTGGGATGTTGGAGAAAGTGACTGTATTGGATATCAGCAATAATGAGTTTGTGGGGACTCTTCCTAACATGACAGGGTTGAAGAATGTTGTGGTGATCGACATAGCGCACAACAAGCTTACTGGATTTGTGTCTAACAATGTTTGCCAGCTACCTTTGTTGAAGAACTTTACATTCTCTCACAACTACTTCAGTGGGGAGGCTCAGGCTTGTGTGGCTTCTTTGGGTTCAATGGTGCATTTTGATGACTCAGGCAATTGTTTATCAGGAAGGAAGAACCAGAAGTCATCCAAGAAGTGCTTCCCAGAGCTGACTCGCTCTGTGGAGTGTAGCAAGCACTGTGGTGGAGGCAATGGGCATAGCTATACCCATCCTCAGACACCAAAGGTTCAACACTCACCACCACCACCACCCCTTGTGTTTTCACCACCTCCACCTGTCCACTCTCCACCACCACCACCAGTTCACTCCCCACCTCCACCTGTGCAATCACCACCACCACCACCACCAGTCCACTCCCCACCTCCACCAGTTAACTCTCCTCCACCCCCACCCCCACCTGTTAACTCTCCCCCTCCACCTGTCCAATTTTCCCCACCACCACCTGTTAACTCTCCACCACCCCCACCACCACTCAACTCTCCACCTCCACCTGTTCAATCTCCTCCTCCTCCACCACCAGTCAACTCCCCACCACCACCTGTTAACTCTCCACCACCCCCACCACCACTCAACTCTCCACCTCCACCTGTTCAATCTCCTCCTCCTCCACCACCAGTCAACTCCCCACCACCACCTGTTAACTCTCCACCACCCCCACCACCACTCAACTCTCCACCTCCACCTGTTCAATCTCCTCCTCCTCCACCACCAGTCAACTCCCCACCACCACCTGTTAACTCTCCACCACCCCCACCACCACTCAACTCTCCACCTCCACCTGTTCAATCTCCTCCTCCTCCACCACCAGTCAACTCCCCACCACCACCAGTCCAATCTCCTCCTCCTCCACCACCACCACCTACCCATTTTCCACCACCACCACCAGTTCAATCTCCTCCTCCACCACCAGTTAACTCCCCACCACCACCACCTACCCAATCTCCACCACCACCAGTTCAATCTCCTCCTCCACCACCAGTCAACTCCCCACCACCACCACCACCAGTCCAATCTCCTCCTCCACCACCAGTCAACTCCCCACCACCACCACCAGTTAACTCTCCACCTCCACCAGTTTTCTCCCCACCACCACCAATCCAATCTCCTCCTCCACCACCACCTGTTCAGTCACCTCCTCCACCAGTCCAATCCCCATCACCACCAACATGGGATGATATTTTCCTCCCGCCATTCTTCGGAGCTGAATACAGATCACCACCTCCACCAACCATTGTTGGATACTAA 2235 0.506 MDHHCSNKALGCYLLFTIFVSVFSTHSCAQDVPEEFIFPEPLPENNDALLAPAPAPESSTSFANERLRKAHVALQAFKRAIYSDPSNITGNWVGEDVCSYNGVFCAPALDDPTVNVVAGLDLNNADIAGRLPEELVHLTDIALLHINSNRFCGIVPNILENFTLMHEFDISNNRFVGGFPSVVLKWPNLKYLDIRFNDFEGPLPPELFEKDLDAIFLNNNRFTSKIPDTLGKSNASVVTFANNNFKGCIPTSIGEMKNMNEVVFMGSGLGGCLPKEIGMLEKVTVLDISNNEFVGTLPNMTGLKNVVVIDIAHNKLTGFVSNNVCQLPLLKNFTFSHNYFSGEAQACVASLGSMVHFDDSGNCLSGRKNQKSSKKCFPELTRSVECSKHCGGGNGHSYTHPQTPKVQHSPPPPPLVFSPPPPVHSPPPPPVHSPPPPVQSPPPPPPVHSPPPPVNSPPPPPPPVNSPPPPVQFSPPPPVNSPPPPPPLNSPPPPVQSPPPPPPVNSPPPPVNSPPPPPPLNSPPPPVQSPPPPPPVNSPPPPVNSPPPPPPLNSPPPPVQSPPPPPPVNSPPPPVNSPPPPPPLNSPPPPVQSPPPPPPVNSPPPPVQSPPPPPPPPTHFPPPPPVQSPPPPPVNSPPPPPTQSPPPPVQSPPPPPVNSPPPPPPVQSPPPPPVNSPPPPPVNSPPPPVFSPPPPIQSPPPPPPVQSPPPPVQSPSPPTWDDIFLPPFFGAEYRSPPPPTIVGY 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00137 744 MobiDBLite consensus disorder prediction 405 722 - -
Cca06g00137 744 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 9 403 - -
Cca06g00137 744 PRINTS Proline rich extensin signature 411 423 - -
Cca06g00137 744 PRINTS Proline rich extensin signature 429 445 - -
Cca06g00137 744 PRINTS Proline rich extensin signature 450 462 - -
Cca06g00137 744 PRINTS Proline rich extensin signature 466 487 - -
Cca06g00137 744 SUPERFAMILY L domain-like 71 366 - -
Cca06g00137 744 Pfam Leucine rich repeat N-terminal domain 73 105 IPR013210 -
Cca06g00137 744 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 403 - -
Cca06g00137 744 Gene3D Ribonuclease Inhibitor 234 388 IPR032675 -
Cca06g00137 744 Gene3D Ribonuclease Inhibitor 68 233 IPR032675 -
Cca06g00137 744 MobiDBLite consensus disorder prediction 397 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00137 Cca-Chr6 3227909 3230323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00137 1 615 Trihelix Transcription Factor Family AT3G19020 49.114 7.32e-169 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00137 - - aprc:113870095 601.282