Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00134 ATGCCTCGCCCGTGTTTCAACAAGCTTGTTCTTCCCATAACCCTCCAATCCAGACAACTGAGGATTCCGGATAGCTTTCTGAGGAAATATGGGGCCCAGCTTTCTACAATTGCTACCCTCACTGTTCCTGATGGTAGTGTTTGGCGTATAGGATTGAAGAAAGCTGACAACAGAATTTGTTTTGTTGATGGCTGGCAAGACTTTGTTCAACGCTACTCCATCGGTGTTGGATACTTTTTGGTATTCATGTATGAAGGGAATTCATCATTCATTGTTCATATGTTTAATTTGAGTACTTCTGAGGTAAATTATCAATCAGCCATGAGAAACCATAATGAAGGGCCTTGCTTTGCCAATTATCATCATATTTTTGATGAAATGGAAGATGTAGACTCCCTTGATTTGTCAGATTCCTCATCTCCATTCCTTACTCCTGGTGCATTGCAAAACAAGGTTTTTGCTGGATCTGTTGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTTTGCAGAATTTGTTCAATGGTGGATCAAAACTCAATCGGGTAAACTGGGGAGATGGTGGGAGTGCATTTTCTTCAAAGGGTGCCAATTCACAAGGCAATCAGTCAACAACTAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACTGACGAATTGAAATTGCGGTATTCTACTAATGAGGAAGCAGCTAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGCCCAATGGCGAGGAACCCTCTGGTGAAAATGAAGAGGAGGCCGAAATGCGCTATAGATTTTATGAAAGTGCATCTGCGAGGAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCAATTAACGCAGCAAAAGCATTTGAACCGACTAATCCTTTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCTTCGTGCTTTGCAGAGAAGAATCTGAATGGGGTTTCAGGATTCATTAAGCTTCAGTTGTCCAATGGTAGACAGTGGTCTGTCCGATGTCTCTATCGGGGCGGCCGAGCAAAGTTAAGCCAAGGATGGTTTGAATTCACATTGGAGAACAATTTGGGGGAAGGTGATGTTTGTGTGTTTGAGCTCCTTAGAGTGAGGGAAGTTGTGCTGCAAGTTACGATATTTCGTGTTACTGAGGATGCAGGGTTGTTGAATTCTCCTCCTATgcagctacagcagcagcagcagcagTCGAGCCAAAACATGAGCCACACCAAGCTCTTGAACCCTCACTTGCAGCATCGCGTTAGTCCAACCAAATTGGTTAGAAATTAG 1326 0.4208 MPRPCFNKLVLPITLQSRQLRIPDSFLRKYGAQLSTIATLTVPDGSVWRIGLKKADNRICFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHMFNLSTSEVNYQSAMRNHNEGPCFANYHHIFDEMEDVDSLDLSDSSSPFLTPGALQNKVFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSAFSSKGANSQGNQSTTRDIGVQFNAVEFKRSTDELKLRYSTNEEAANKTAKKKRKSEPNGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINAAKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRVREVVLQVTIFRVTEDAGLLNSPPMQLQQQQQQSSQNMSHTKLLNPHLQHRVSPTKLVRN 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00134 441 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Cca06g00134 441 MobiDBLite consensus disorder prediction 229 262 - -
Cca06g00134 441 Gene3D - 277 397 IPR015300 -
Cca06g00134 441 ProSiteProfiles B3 DNA-binding domain profile. 300 395 IPR003340 GO:0003677
Cca06g00134 441 MobiDBLite consensus disorder prediction 229 252 - -
Cca06g00134 441 Pfam B3 DNA binding domain 14 96 IPR003340 GO:0003677
Cca06g00134 441 Pfam B3 DNA binding domain 303 394 IPR003340 GO:0003677
Cca06g00134 441 PANTHER B3 DOMAIN-CONTAINING 1 431 - -
Cca06g00134 441 CDD B3_DNA 298 393 IPR003340 GO:0003677
Cca06g00134 441 SUPERFAMILY DNA-binding pseudobarrel domain 293 394 IPR015300 -
Cca06g00134 441 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Cca06g00134 441 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 431 - -
Cca06g00134 441 SMART B3_2 300 395 IPR003340 GO:0003677
Cca06g00134 441 SMART B3_2 6 98 IPR003340 GO:0003677
Cca06g00134 441 Gene3D - 1 99 IPR015300 -
Cca06g00134 441 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00134 Cca-Chr6 3118078 3124100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00134 1 399 B3 DNA Binding Superfamily AT3G18990 49.512 4.78e-126 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca06g00134 B3 2.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00134 - - gmx:100806715 742.651