Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00108 ATGGATTCCGAAGTACTTAACATCCTGGCCCTTGTGATGCCTCTTTTCCTCTTTGTGATTCTGGCACAGAAAATAGGGAAGAATGTTAAGAAAACTGATTCATCTCTAAAATTGCCTCCAGCACCATGGAAGCTACCTATTATAGGAAATACACATCATTTAGTAACATCAATACCACCACATAAAAGATTAAGAGACTTGGCCAAAATATATGGACCCTTCATGCATCTTCAACTTGGGGAGGTCTTCACAATCATTGTTTCCTCACCAAAATATGCTATGGAGATAATGAAAACTCATGATGTCATCTTTGCATCAAGGCCTCGCATTCTAGCCTCAGTTGTCTTTTCTTATGAATGCAAAGATATTGCCTTTTCACCTTATGGAGATTATTGGAGACAGTTACGAAAATTGTGCACAGTGGAGCTTCTCACCCAGAAACGTGTCAACTCATTCCAACCAATAAGAGAAGAAGAACTCGCCAATCTCGTTAAAATGGTTGCTTCACATAATGGGTCCCCCATCAACCTCACTGAAGCAGTTCTTTTATCAACATATAATATCATTTCAAGAAGTGCTTTTGGCATGAAATGCAGAGACAAGGAAGAATTCATATCGCTCCTAAAAAAAGTAATGACAGTTACAGCAGGTTTTAACATAGAAGATCTGTTTCCTTCTGCTAAATGGCTTCATCTTGTTACTGGTGCGAGGCCTAAACTCGAGAGGTTGCATCGACAAATGGATAAGATACTACAAAACATCATCGATGAACACAAAGAGGCAAAGTCAAAAGCTAAAGAAGACCAAGCTGAAGCAGAGGAATATTTGGTAGATATTCTACTAAAATTCCAGGATGGTAATGATAGTAACCAAAACATTTGCTTAACTATTAACAATATCAAGGCTATAATCATGGACATCTTTGCTGCTGGAGGTGAGACAGCAGCAACTACCATAAATTGGGCAATGGCGGAGATGATAAGGGATCCAACAATAATGGAGAAAGCACAAGTTGAGGTTAGAGAGGTATTTGGCTTGAAAGAAAGGGTTGATGAAATTTGCATCAATGAACTCAAATATTTGAAATCAGTTGTCATGGAGACACTAAGGTTACACCCCCCAGCTCCTCTTTTACTTCCAAGAGAATGTGGAGAATCAAGTGAGATTCATGGATATCATATACCAGTTAAAAGCAAGGTAATTGTGAATGCTTGGGCAATAGCAAGAGATCCAAACTATTGGACAGAAGCAGAGAGATTTTATCCAGAGAGATTCATTGATAGCTCTATTGACTACAAAGGGAATAATTTTGAGTACATTCCATTTGGTGCTGGAAGAAGAATATGCCCTGGAAGCAACTTTGGTTTAATAAATGTTGAGTTGGCCCTTGCATATTTGTTGTATCACTTTGATTGGAAGCTTCCAAATGGAATGAAAAGTAAGGAATTGGACATGACCGAGGAATTCGGAGTTACTGTTAGTAGAAGAGATGACCTATATTTGATGCCTGCCACTTCTCGTCCTTTCCAGAACTGA 1536 0.3874 MDSEVLNILALVMPLFLFVILAQKIGKNVKKTDSSLKLPPAPWKLPIIGNTHHLVTSIPPHKRLRDLAKIYGPFMHLQLGEVFTIIVSSPKYAMEIMKTHDVIFASRPRILASVVFSYECKDIAFSPYGDYWRQLRKLCTVELLTQKRVNSFQPIREEELANLVKMVASHNGSPINLTEAVLLSTYNIISRSAFGMKCRDKEEFISLLKKVMTVTAGFNIEDLFPSAKWLHLVTGARPKLERLHRQMDKILQNIIDEHKEAKSKAKEDQAEAEEYLVDILLKFQDGNDSNQNICLTINNIKAIIMDIFAAGGETAATTINWAMAEMIRDPTIMEKAQVEVREVFGLKERVDEICINELKYLKSVVMETLRLHPPAPLLLPRECGESSEIHGYHIPVKSKVIVNAWAIARDPNYWTEAERFYPERFIDSSIDYKGNNFEYIPFGAGRRICPGSNFGLINVELALAYLLYHFDWKLPNGMKSKELDMTEEFGVTVSRRDDLYLMPATSRPFQN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00108 511 Gene3D Cytochrome P450 31 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 184 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 SUPERFAMILY Cytochrome P450 39 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 Pfam Cytochrome P450 39 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PANTHER CYTOCHROME P450 71B11-RELATED 13 505 - -
Cca06g00108 511 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00108 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Cca06g00108 511 Coils Coil 240 278 - -
Cca06g00108 511 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 13 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00108 Cca-Chr6 2651482 2708268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00108 8 504 Cytochrome P450 AT3G26300 41.386 4.96e-134 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00108 - - gmx:102665189 809.675