LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g00098	ATGCTTGACTTATTAGCCCTCATCACTTTTTCTCTCTTGATAATTGTGACACTAAATATAGTGAGGAATCATAAGAAAACAGATCAACCAACTCAAAATATACCTCCAGGACCATGGAAGCTACCGATTATAGGAAATATACCTCATATTCTTACATCTGCACCCCATAAAAGATTGAGAGACCTAGCCAAAATATATGGTCCTTTGATGCATCTGCAACTTGGAGATAAGAGCACAATCATTGTTTCCTCGGCCGAGTATGCTAGAGAGATAATGAAAACTCATGATGTTATCTTTGCATCAAGGCCTCGTAGTGCAACTTCAGATATATTGTCCTATGAAGCCACAGGTATTGCTTCTGCACCTTATGGAAATTATTGGAGAGTGTTACGAAAGATATGCACAATGGAGCTTTTGTCCCCAAAACGTGTCGATTCATTTCAGCCAATAAGGGAATTAGAAGAGCTCACCAGTCTCATCAAAATGATTGATTCTCATAAAGGATCTCCCATCAACCTCACTCATGTAGTACTTTCATCGATATATTCTATCATTTCAAGAGCTGCTTTTGGCAAGAAGTATGGTAAAGAGCAAGAAGAATTCATATCATTGATGAAAGAAGGACTTACGATATTGGGAGATTTATTTCCTTCTACTAGATGGCTTTCAGTTGTCACCGGTTTGAGGCCTAAGCTTGAGAGGTTGCATCGACAAGTTGATCAGATTCTAGAAAACATCATCATTGAACATAAAATGGCAAAGTCAAAAGTCAGGAAAGGTCAAGATGAAGGAAAGGAAGATTTGGTAGATATTCTCCTAAAATTCCAGGATGGTAATGATAGTAACAATCATATTTGCTTAACTAATAAGCATGTCAAGGCTACAATCCTGGAAATCTTTGGTGCCGGGGCTGAGCCATCAGCAATTACCATAGATTGGGCTACGGCTGAGATGGTAAAAGATCCTAGAGTGATGAAGAAAGCACAAGCTGAAGCGAGAAAGGTATTCAATATGAAAGGAAGGGTTGACGGAACATGTATCAATGAACTTAAATATTTGAAATTGGTTGTTAAAGAGACCCTAAGATTACACCCTCCTGGTCCTCTTTTACTTCCAAGAGAATGTAGACAAGCATGTAAGATTCATGGCTATCTCATACCATTCGGAAGTATTGTCATAGTCAATGCTTGGGCAATTGGAAGAGATCCAAACTATTGGACAGAACCGGAGAGATTTTATCCAGAGAGATTCATTGATAGCTCTATTGATCATAGTGGGAACAGTTTTGAGTACATTCCATTTGGTGCTGGAAGAAGACTATGCCCAGGCAGCAACTTTGGTTTGATGAATGTTGAGCTAACACTTGCGTTGTTATTGTATCACTTTGATTGGAAGCTTCCCAATGGAATGAAAAATGAGGACTTGGACATGACCGAGGAATTTAAGGTAACTATTAGAAGAAAAGAAGACCTGTACTTGATTCCTGTATCTTCTTCTTTTGGATAA	1506	0.3858	MLDLLALITFSLLIIVTLNIVRNHKKTDQPTQNIPPGPWKLPIIGNIPHILTSAPHKRLRDLAKIYGPLMHLQLGDKSTIIVSSAEYAREIMKTHDVIFASRPRSATSDILSYEATGIASAPYGNYWRVLRKICTMELLSPKRVDSFQPIRELEELTSLIKMIDSHKGSPINLTHVVLSSIYSIISRAAFGKKYGKEQEEFISLMKEGLTILGDLFPSTRWLSVVTGLRPKLERLHRQVDQILENIIIEHKMAKSKVRKGQDEGKEDLVDILLKFQDGNDSNNHICLTNKHVKATILEIFGAGAEPSAITIDWATAEMVKDPRVMKKAQAEARKVFNMKGRVDGTCINELKYLKLVVKETLRLHPPGPLLLPRECRQACKIHGYLIPFGSIVIVNAWAIGRDPNYWTEPERFYPERFIDSSIDHSGNSFEYIPFGAGRRLCPGSNFGLMNVELTLALLLYHFDWKLPNGMKNEDLDMTEEFKVTIRRKEDLYLIPVSSSFG	501

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g00098	501	Pfam	Cytochrome P450	35	486	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca06g00098	501	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	434	443	IPR017972	GO:0005506\|GO:0016705
	Cca06g00098	501	Gene3D	Cytochrome P450	25	491	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca06g00098	501	PRINTS	E-class P450 group I signature	180	198	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca06g00098	501	PRINTS	E-class P450 group I signature	311	337	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca06g00098	501	PRINTS	E-class P450 group I signature	395	419	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca06g00098	501	PRINTS	E-class P450 group I signature	87	108	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca06g00098	501	PRINTS	E-class P450 group I signature	431	441	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca06g00098	501	PRINTS	E-class P450 group I signature	291	308	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca06g00098	501	PRINTS	E-class P450 group I signature	63	82	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g00098	Cca-Chr6	2363561	2365465	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca06g00098	4	496	Cytochrome P450	AT3G26300	43.222	2.81e-130	386

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g00098	-		-	gmx:100818520	774.237

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