Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00097 ATGGAAAAGGTGGCTCCGCCTCCGATTCTCATGCAGAGGAAGCGCGATCTCTCCTACGCCGTCGTTCCGGGGAACCCCACCGACAACTGGAAGTGGGACTGGGACACCGTGCGTTTCGCGGGAAAGCCCCCGCCCAGCGACGCCGTTTTGGAGGAGGAGAGCGCGCCGCCGCCTCTGCAGCTGAATCTGGGGAGGGCGAGCGGCGGGAACAAGAGGCTGCGCTCGGGGTCGCCCGGAACGGCGTCGTATCCGATGTGCCAGGTCGACAACTGCAGGGAGGATCTCTCCAAGGCCAAGGACTATCACCGGAGACACAAGGTCTGCGAGGCTCACAGCAAAGCCTCCAAGGCGCTTCTCGCCAACCAAATGCAACGCTTCTGCCAGCAGTGCAGCAGGTTCCACCCCCTCTCCGAGTTCGACGAGGGCAAGCGCAGCTGTCGCCGGAGACTCGCCGGACACAACCGTCGCCGCAGGAAGACGCAGCCCGAGGATGTTACCTCCGCCACTCCCGCGCCCGCCGCTGCCAATTTCGAAATCTTCAACCTGTTGACTGCCATAGCTGGAGCGTCGCAGGGAAAGTTTGAGGAAACAAGGTCACAAGTTCCTGATAGAGAGCAGCTTGTTCAGATTCTCAATAGGATACCTTTGCCGGCTGATCTTGCAACCAAGTTGCTGGATGCTGGTAATGTCAATGGGAAAAAGGATCATGTGCAATTGCAAACACCATCATCCTATACTCGTCATGACCAACTGAATCACATGCCTTCTGCTCCATTAACTATGGACTTGCTTGCTGTTCTTTCCACCACTCTGTCTGGGTCAGGCCCTGATGCTACCACGTCGCCCTCTCAAAATCGCAGCTGCACCAGTGATGGTGGCAGTGACAAGTCTCGGACTAGTGCTGACCAGACAAGACAACAGCAGTTCTTTTCAGTTGGTGGAGAAAGAAGCAGTAGTAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTTCGAGTTAATTTACCGCTGCAACTCTTTAGCTCCTCTCCGGAAGATGACAGCCTGCCTAAACTAGCATCTTCAAGAAAGTATTTCTCATCTGACAGTAGTAACCCTGCTGAAGAGAGGTCTCCATCGTCCTCTCCTGTTGGGGAGATGCAGTTTGATTTGCAGGGTGGGGCTATGAGTCTCAAGCCAGAGAGCATCTCATCTGGAAGAGGAGTTAATGCAAATAAGGAAATTAGCCAAAGTCATAGTTATAATATCTCTCTTGATCTCTTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTCACTTCATAGTGTTCCTTTTCAAGCTGGGTATACATCTTCAGGCTCCGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGTACTGGGAGAATAATGTTTAAACTATTTGACAAGCATCCCAGTCATTTCCCAGGAACATTGCGAACACAGATTTACAATTGGCTTTCTAATAGGCCATCGGACATGGAGAGCTACATAAGGCCTGGTTGCGTGGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCATGGGAGAAACTTGAAGAAAACTTCCTTCAACACGTTCATTCATTAATTCAAAATCCAGATTCCGATTTATGGAGAAATGGAAGGTTTCTAGTTCATTCTGGCAGTCAGATGGCTTCACACAAAGATGGGAAGATACGCATATGCAAATCATGGAGAACATGGAAATCACCCGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAAGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGATTCATTGCACAGGTACTGCCTCATACACATCGGCAGAAGTCATGGAATCTGCATATCCTGGTGTGATGTATGATAAGATAAAGTTGGGTGGTTTTAAAGTCCAGGATGTATCTCCTGGTGTTCTGGGTCGCTGTTTTATTGAGGTTGAAAATGGTTTCAAGGGTAATAGTTTTCCAGTGATAATTGCTGATGAGACCATTTGCAAGGAGTTGAAACTACTCGAGTCCGAATTTGATGAGGAGGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAACATCAATTTGGAAGGCCCAGGTCAAGGGAGGAGGCTTTGCACTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGGTTCTCATATGTGCATGAGGTTCCATATTATTCTCTTGACAGGTTCAAATTTGTACTCACATTTTCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAAACCTTCTGGATGTGCTGGTTGATAAACACTTGCAAGGGGACTGGTTATCAACAGGATCTGTGGAGATGCTGAATGCAATCCAACTATTAAATAGAGCAGTGAAGGGAAAGTACAAAGGCATGGTTGATTTGCTCATTCACTATTCTATACCGAGCAAAAATGGTACATCCAAGAAATATGTATTTCCACCGAATCTTGAGGGTCCTGGTGGTATTACACCCTTGCACTTGGCAGCATGCACATCAGGTTCTGAGAGAATAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGGTTGAAGTGCTGGGAGTCCCTTGTGGATACAAATGGTCAGACTCCGCACGCATACGCCATGATGAGGAATAATGACTCTTATAATGTGCAGGTTGCCCGTAAAGTTGCTGAAAGACGAAGGGGTGAAATTTCGGTAACAATTGAGAATGAGATAGAGCAATCGTCACTGAGAGTGGAGCTTAAGAAAAAGCAAAGTAACCTAATCAAACGAGGTCAAAGTTCTTGTGCCAGGTGTGCTGTTGCTGAAATTCACTACAACAGAAGAGTTCCTGGTTCACAGGGTTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCTGTTGCAGCTGTTTGTGTATGTGTTTGTCTGTTCTTCCGAGGACGCCCTTTTGTGGGCTCAGTTGCTCCCTTCAGTTGGGAAAATCTGGATTATGGCACAATGTAA 3003 0.4745 MEKVAPPPILMQRKRDLSYAVVPGNPTDNWKWDWDTVRFAGKPPPSDAVLEEESAPPPLQLNLGRASGGNKRLRSGSPGTASYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAANFEIFNLLTAIAGASQGKFEETRSQVPDREQLVQILNRIPLPADLATKLLDAGNVNGKKDHVQLQTPSSYTRHDQLNHMPSAPLTMDLLAVLSTTLSGSGPDATTSPSQNRSCTSDGGSDKSRTSADQTRQQQFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEERSPSSSPVGEMQFDLQGGAMSLKPESISSGRGVNANKEISQSHSYNISLDLFKGSNNRIQQPSSLHSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSNRPSDMESYIRPGCVVLSIYASMSSAAWEKLEENFLQHVHSLIQNPDSDLWRNGRFLVHSGSQMASHKDGKIRICKSWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTASYTSAEVMESAYPGVMYDKIKLGGFKVQDVSPGVLGRCFIEVENGFKGNSFPVIIADETICKELKLLESEFDEEEKICDAISEEHEHQFGRPRSREEALHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFSVERNCCMLVKNLLDVLVDKHLQGDWLSTGSVEMLNAIQLLNRAVKGKYKGMVDLLIHYSIPSKNGTSKKYVFPPNLEGPGGITPLHLAACTSGSERIVDSLTSDPQEIGLKCWESLVDTNGQTPHAYAMMRNNDSYNVQVARKVAERRRGEISVTIENEIEQSSLRVELKKKQSNLIKRGQSSCARCAVAEIHYNRRVPGSQGLLHRPFIYSMLAVAAVCVCVCLFFRGRPFVGSVAPFSWENLDYGTM 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00097 1000 SUPERFAMILY Ankyrin repeat 751 886 IPR036770 -
Cca06g00097 1000 MobiDBLite consensus disorder prediction 272 327 - -
Cca06g00097 1000 MobiDBLite consensus disorder prediction 434 462 - -
Cca06g00097 1000 MobiDBLite consensus disorder prediction 150 170 - -
Cca06g00097 1000 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 25 1000 - -
Cca06g00097 1000 ProSiteProfiles Zinc finger SBP-type profile. 83 160 IPR004333 GO:0003677
Cca06g00097 1000 Coils Coil 680 700 - -
Cca06g00097 1000 Gene3D - 747 935 IPR036770 -
Cca06g00097 1000 MobiDBLite consensus disorder prediction 338 383 - -
Cca06g00097 1000 SUPERFAMILY SBT domain 84 164 IPR036893 GO:0003677|GO:0005634
Cca06g00097 1000 Gene3D - 76 147 IPR036893 GO:0003677|GO:0005634
Cca06g00097 1000 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 1000 IPR044817 GO:0003677
Cca06g00097 1000 MobiDBLite consensus disorder prediction 272 384 - -
Cca06g00097 1000 Pfam SBP domain 86 159 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00097 Cca-Chr6 2351006 2357185 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00097 3 1000 SBP-box Gene Family AT1G20980 52.602 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca06g00097 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00097 - - gmx:100812180 1763.04