Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00092 ATGGGTAGTTGTGGAAGGGAAGGTGTTGTGAGACAGTATATAAGATCAAAAGTCCCTCGTTTAAGATGGACCCCTGAACTCCACCGTTGCTTTGTTTATGCCATTGAGACTCTTGGAGGTCACCACAAGGCTACTCCTAAGCTTGTTCTTCAATTGATGGATGTTAAAGGGCTAACAATTTCACACGTCAAAAGCCATTTGCAGATGTACAGAAGCATGAAAGGTGACTCCTGCAAACAAGCTGATAGGACTTCCACCCAACATAGAAAACAATCTTTTCAGGAGCatgatgatggatgtgttgatgaagtgagtgatgttgGTTTTCACTCTTGCTTAAAATCCATTGGAAAAGAATCTGATTCCCTCTCCACCTGCAGTAATTTCTCCTCAAAAAGAGCTAGAATCGAGAAGCAAAGTTTACTCTCAGGAATCCTACAATGCAGCCAAAGAATATGTGAAGCAGTTCCAAATCCATACACTACTTTTTATGATTACCTGCAGAGCATGGCTGAGCAGAAGGTAATAAAGAAGATTTGTGTTGCTTCAATGTGGCAGACTCAACCCCTTTCCACAACCTTTCCTATGCTCCCAAAGCAAGAATCAGATTTTCTCCAGGTTGAGAAATTAAATGAGAAACAGGCTTTGAATGATGTTGGGAACACTTGGAGAGTACGAGAACATGATGAAGACATAGGACTAGGAGGTTGTGAGTTGTCACTGTCGATCTCATTGCCACAACCCCATCCTTCTTCTCAGAAAAGTAATGGTTCTTCTTCAGTGAGTGAGACCAGTGAGGCATTTTCATTGTGCCCTGAGATTAGCAACAAATGCATGGGCTGTTCTAGTTCTTCCAATGTCCCAAACAGGATTAATTTGGACCTATCTTTGGCCATTTGA 900 0.4033 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGDSCKQADRTSTQHRKQSFQEHDDGCVDEVSDVGFHSCLKSIGKESDSLSTCSNFSSKRARIEKQSLLSGILQCSQRICEAVPNPYTTFYDYLQSMAEQKVIKKICVASMWQTQPLSTTFPMLPKQESDFLQVEKLNEKQALNDVGNTWRVREHDEDIGLGGCELSLSISLPQPHPSSQKSNGSSSVSETSEAFSLCPEISNKCMGCSSSSNVPNRINLDLSLAI 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00092 299 Gene3D - 18 74 - -
Cca06g00092 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Cca06g00092 299 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Cca06g00092 299 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 299 - -
Cca06g00092 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cca06g00092 299 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 299 IPR044848 GO:0003700
Cca06g00092 299 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00092 Cca-Chr6 2270505 2275221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00092 1 111 G2-like Transcription Factor Family AT1G14600 55.200 7.84e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca06g00092 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00092 - - gmx:100810994 497.664