Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00088 ATGGCAGCACCTTTTTCTGCAGCGTCACTCTTTGGAATCAGAGAAGAGGATCAGAATCAGACGAAGCAGCAGCATTCCTCAACACCATCATCATCAACCACTCCAGCTGCACCACCCCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACGCTAATGGCAACAAACAGGTTCATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCGGAGCCCACATGCGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATCAAGAAACACTACTCTCGCAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCTGATTGGAAGGCACACTCCAAAACCTGTGGCACAAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGACGTGACAGTTTCATCACCCACAGAGCCTTTTGTGATGCATTGGCACAAGAAAGTGCAAGGGAGCCACCCAACCTGAGCAGTGCCATAAGCAACCAACTATATGGGAACAGTAACAACATGTCCTTAGGCTTATCCCAAAACATGTCCCTCCAAGACCAAAACACACAATCTAGTGACCTATTGCGTTTTGGCAGTGGTGCAAGAACTGGTCAATTTGACCACATTCTGCCACCAACCCTTGCCTCACCCTTCAGACCATCCTCACACCAAACCATGCAAACCCCTCCATTCTTCATGCCATCAGAATCAAACCAAAACCAAAGCCAAAACTACCATGACCACCAACAAGGGTTAATCTCAAACAAGCCTTTCCAAGGACTAATACAATTATCTGACCTCAACAACAATATTAATACCCCTTCTGGCTCCAACCTCTTCAACCTTCCCTTTCTATCCAACCGAGCcaacaacaacaacaacagcaacTTCTCTGATCAGGAACAACACTTCAACACTACCGAAGGCTCCAATTTCTTCTCAGAAAGCACCATCATTGGCACTGATGATCACCAAACAAGCTCCACCACTGCCCCTTCTCTCTTCAGCACCTCTCTTCAAAACACCACCAACTTTTCCCACATGTCCGCAACCGCACTGCTTCAGAAAGCTGCTCAAATGGGTGCTGCAAGTTCCAGcaacaacaacaccaacaccaacaccaacaccaCCAACACCAGTGCCTCCTCTCTTCTCAGAAGCTTAGCTTCCAAATCTGATCACAGGCCACTCAGTCCTGCAAACTATGCAACCATCTTCAACAACAGCGTTCAAGAAATGATGAACATTCCGGGGTTTGAAGCGTATGATCATGGCATGAACAAAGAACCGAAACTGAGCGTTGGAGCCTCTGATAGGCTCACGAGGGACTTTCTAGGAGTCAATCTTTCGGAGGTGGAGGGAACTTTCAGTGAAGTACAAAAGGAATGTCAACTTGTTCCATTGAAAATTGACTAA 1563 0.4504 MAAPFSAASLFGIREEDQNQTKQQHSSTPSSSTTPAAPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREPPNLSSAISNQLYGNSNNMSLGLSQNMSLQDQNTQSSDLLRFGSGARTGQFDHILPPTLASPFRPSSHQTMQTPPFFMPSESNQNQSQNYHDHQQGLISNKPFQGLIQLSDLNNNINTPSGSNLFNLPFLSNRANNNNNSNFSDQEQHFNTTEGSNFFSESTIIGTDDHQTSSTTAPSLFSTSLQNTTNFSHMSATALLQKAAQMGAASSSNNNTNTNTNTTNTSASSLLRSLASKSDHRPLSPANYATIFNNSVQEMMNIPGFEAYDHGMNKEPKLSVGASDRLTRDFLGVNLSEVEGTFSEVQKECQLVPLKID 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00088 520 Gene3D Classic Zinc Finger 49 118 - -
Cca06g00088 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 463 - -
Cca06g00088 520 MobiDBLite consensus disorder prediction 13 47 - -
Cca06g00088 520 Gene3D Classic Zinc Finger 124 203 - -
Cca06g00088 520 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 463 - -
Cca06g00088 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cca06g00088 520 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Cca06g00088 520 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cca06g00088 520 SMART c2h2final6 111 141 IPR013087 -
Cca06g00088 520 SMART c2h2final6 70 92 IPR013087 -
Cca06g00088 520 SMART c2h2final6 146 166 IPR013087 -
Cca06g00088 520 MobiDBLite consensus disorder prediction 1 55 - -
Cca06g00088 520 MobiDBLite consensus disorder prediction 410 429 - -
Cca06g00088 520 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00088 Cca-Chr6 2192433 2201133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00088 10 496 IDZ Gene Family AT2G02070 49.165 4.29e-130 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g00088 zf-C2H2_jaz 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00088 K25870 - gmx:100807789 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00088 06 2192433 2201133 Cca06g00088 06 2192433 2201133 ECH