Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00087 ATGGCTTCTGCTTCCTCATCCACACCCTTCTTGGGAATTAGACAAGAAAATCAAAGTCAGGTTACACAACAATCCACAGCTGCTTCCTCAAATACCTCTCCTCCAACCACAGTGCCTCAAAAGAAAAGGAGGAATCAACCCGGAACACCATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACGCTAATGGCAACAAACAGGTTCATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCGGAGCCCACATGCGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATCAAGAAACACTACTCTCGCAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCTGATTGGAAGGCACACTCCAAAACCTGTGGCACAAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATAACTCATAGGGCCTTTTGTGATGCTTTGGCGCATGAGAGTGCAAGACACCCTTCAAACCTGAACCCTTTAGGAACTCATCTGTATGGCACAAACCACATAAGCCTAGGCCTTGGTGCTCAACTTCAGAACCAAGCAACCACTAACAGCATATTGAGCCTTGGAAGTGCACCAAAGTTTGAGCACTTAATCTCTCCCAATCTGCACCACTCATCATCCTTCGGAGTGCAGTCACCACCCCAGTCATCTTTCTTCATGACTGACCCTAACCAGGCATTTCAAGACCTCCAATCTCAGCAACAAGGATCCTTATTCTCAAGCAAGCAACTCCATGGCCTTATGCAACTCCCTGATCTTCAAGGAACCACCAATAACTCCACTTCTGCTTCATCAGTATCTGCCTCACCTAACAACACCAATCTCTTTAACCTCAGTTTCTTTCCTAATGGTAATAGCAGTGGAAGCATAATCAATGATCAATTCAACAACATCAGTGGAGGGAATAGTAATAACCAAGGAACAGCAACACTCTACAGCACTAACAGCCCAGTAAGTAACCAAGTTGGTTCAGGCTTGTCTTCACTCTTTGGCAACTCATCAGTGCAACAAGATCATAACATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACAACTACCAATGGTTCTTCCTCCCTACTAAGAGGAACAGAAGAATTAGGCATGAGATCCAGCAtggaaaatgagcacggtaaccatctacgtggattgatgaactcctttgccaatggaaacacttCCATGTTTGGCAATGTGAAAGGGAACGAAAACAACCTTGGTCAGTTTCACAACGTGGTGGAGGAGCCTAAAAAGTTGTCACAAAATCTTGGTGTCTGCTTTGGAGGGTCTGATAAGTTGACCTTAGACTTTCTGGGTGTTGGAGGAATGGTGAGGAACATGAACGGTAGTGGGTTTTCACAAAGAGATCAACAACAACACTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACATGCAAACCAGCACTTTGGAACTTCAACACTCTAA 1647 0.4372 MASASSSTPFLGIRQENQSQVTQQSTAASSNTSPPTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHLYGTNHISLGLGAQLQNQATTNSILSLGSAPKFEHLISPNLHHSSSFGVQSPPQSSFFMTDPNQAFQDLQSQQQGSLFSSKQLHGLMQLPDLQGTTNNSTSASSVSASPNNTNLFNLSFFPNGNSSGSIINDQFNNISGGNSNNQGTATLYSTNSPVSNQVGSGLSSLFGNSSVQQDHNMSPHMSATALLQKAAQMGSTTTTNGSSSLLRGTEELGMRSSMENEHGNHLRGLMNSFANGNTSMFGNVKGNENNLGQFHNVVEEPKKLSQNLGVCFGGSDKLTLDFLGVGGMVRNMNGSGFSQRDQQQHSMGTMSPLDPKLESAHANQHFGTSTL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00087 548 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Cca06g00087 548 MobiDBLite consensus disorder prediction 510 548 - -
Cca06g00087 548 Gene3D Classic Zinc Finger 53 118 - -
Cca06g00087 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Cca06g00087 548 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Cca06g00087 548 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Cca06g00087 548 Gene3D Classic Zinc Finger 124 203 - -
Cca06g00087 548 MobiDBLite consensus disorder prediction 510 527 - -
Cca06g00087 548 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 519 - -
Cca06g00087 548 MobiDBLite consensus disorder prediction 1 53 - -
Cca06g00087 548 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 519 - -
Cca06g00087 548 SMART c2h2final6 70 92 IPR013087 -
Cca06g00087 548 SMART c2h2final6 146 166 IPR013087 -
Cca06g00087 548 SMART c2h2final6 111 141 IPR013087 -
Cca06g00087 548 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00087 Cca-Chr6 2150236 2155060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00087 10 513 IDZ Gene Family AT2G02070 47.644 7.28e-133 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g00087 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00087 K25870 - gmx:100806198 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00087 06 2150236 2155060 Cca06g00087 06 2150236 2155060 ECH