Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00086 ATGAAGCCCGAGTTGTACGAAATCTCCGACGAAGAATGGGAGAATCACTCCTTCAAACCCTCCCGAGTTCTCAAGCGACCCCGCACTTCCTCTCCCTCTCCGCCGCCCATCGAGTCCTTCGCTTACGCCCCCAAGCCCGACGTCTCCAGCGAAAACGACAGCGACTGCGTCGAAATCGCGCCCAGCTTCCGCCAAAATCTAGACGACCTCGAGgacgccgacgccgacgccgacgccgGTTGCGCCGCGGCCTCCTCCCGCGCCCGCCGCTTCGTGATcgacgacgacgatgacgacggcgccgaggagaacggcgggagcgagcgacgCGTGGCGGAGGCTTACGACGTGGCGTCGAGCgaggaggaggaggaggaggaggaggaggaAGAGTTTGAAGAGGAGTTGGACGAGGACGACGTGGTTGGTAGGGCTTTGCACAAGTGCGCGCGAATCTCCGCGGAGTTGAAGGGCGAGCTCTTCGGCTCCTCGGGGACCGCGTGCGAGAGGTATTCGGAGGCTGAGTCTTCTTCAGTGAGGATCGTGACTCAGGAGGATGTTGACGTTGCTTGCGGCTCCGAGGATTCGGATTTTCAGCCTCTGCTCAAGCCGTATCAGTTGGTTGGCGTCAATTTTTTGCTTCTGTTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCCATCACCTATTTAACTTTGTTGAAACACTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAATTGAAAAGGTGGTGTCCATCCTTTTCTGTTCTTCAATATCATGGTGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCCCTGTCCAAGAAGGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGACACAGTGCACAGCAGAAAGATGATCGCAAAATCCTGAAGCGGTGGAGGTGGAGCTGTGTGCTGATGGATGAAGCACACGCTTTGAAGGACAAAAATAGCTTTAGGTTTAAAAATCTGATGTCTGTTGCACGAAATGCAAGCCTACGCCTGATGCTGACAGGGACACCACTTCAGAATGATCTACATGAGTTATGGTCATTATTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGATGTTGACCTAAAGAAGTTACTAGATGCAGAAGATAGAGATTTAATTAGTCGAATGAAGTCCATCTTAGGGCCATTTATTTTGCGGAGACTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTATAATGGAAAGGCAGCAAGAAACTGCTTACAAGGAAGCGATTGAAGAGTATCGTGCTGTTTCACAGGCTCGCATGGCAAAATGTTCTGAGCTTAATTCAAAAACTGTTCTTGAAGTTCTTCCTCGACGACAGATAAATAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGTTAATAAGGCGAATCTACACTGATGAGGATGTTATTCGCTTTGCTAGGAAGCTACATCCGATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGGGTTATAGAGGAACTTAAAGGTTACAATGACTTCTCTATTCATCGGCGGCGGCATGATTATGTGCTGGGTATGCTGAGATTGAGCTACTCCATGGATAATGTAGGCCTTAGCTGA 1731 0.4466 MKPELYEISDEEWENHSFKPSRVLKRPRTSSPSPPPIESFAYAPKPDVSSENDSDCVEIAPSFRQNLDDLEDADADADAGCAAASSRARRFVIDDDDDDGAEENGGSERRVAEAYDVASSEEEEEEEEEEEFEEELDEDDVVGRALHKCARISAELKGELFGSSGTACERYSEAESSSVRIVTQEDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYCKELNSLSKKGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRFKNLMSVARNASLRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKKLLDAEDRDLISRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQETAYKEAIEEYRAVSQARMAKCSELNSKTVLEVLPRRQINNYFVQFRKIANHPLLIRRIYTDEDVIRFARKLHPIGAFGFECTLDRVIEELKGYNDFSIHRRRHDYVLGMLRLSYSMDNVGLS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00086 576 PANTHER SNF2/RAD54 HELICASE FAMILY 67 554 - -
Cca06g00086 576 MobiDBLite consensus disorder prediction 118 138 - -
Cca06g00086 576 MobiDBLite consensus disorder prediction 89 138 - -
Cca06g00086 576 Gene3D - 202 437 IPR038718 -
Cca06g00086 576 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 393 IPR014001 -
Cca06g00086 576 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 67 554 - -
Cca06g00086 576 MobiDBLite consensus disorder prediction 103 117 - -
Cca06g00086 576 SMART ultradead3 198 403 IPR014001 -
Cca06g00086 576 Pfam SNF2-related domain 222 508 IPR000330 GO:0005524|GO:0140658
Cca06g00086 576 CDD DEXHc_Snf 202 395 - -
Cca06g00086 576 MobiDBLite consensus disorder prediction 1 21 - -
Cca06g00086 576 MobiDBLite consensus disorder prediction 1 54 - -
Cca06g00086 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 428 IPR027417 -
Cca06g00086 576 Coils Coil 111 142 - -
Cca06g00086 576 Gene3D - 438 513 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00086 Cca-Chr6 2104842 2118100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00086 200 509 RAD5 or RAD16-like Gene Family AT1G02670 25.836 1.44e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca06g00086 SNF2_N 4.1e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00086 K14439 - gmx:100806323 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00086 06 2104842 2118100 Cca06g00086 06 2104842 2118100 ECH