Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00084 ATGGGGAGGATCAAGCCTCAAGCTCTGCTACAGCAAAGCAAGAGGAAGAAGGGGCCTTCACACATAAGTGCCAGCACTGCTATATTCTATATATTGATTTTTGTCGTACTTGTGTATTTCCTGTTTGCTACATACAGACATTGGTCCAAAAGGACAACACTTCAACCCGAAAGGTACATATCAGTCTATGAGGATGAAAATACAATTGTGGAATCCAAAAAATCTGATCTACCTGAATATGCTGTTGTAATTACCTCCAAAGGTTCTATTATAGTAGAACTTTATAAGGAAAGTGCTCCTGAGGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTCATTCAGGCAGGTCATAACAGAGGACCTGGAGCTACTGAAGATTGGAACTTGTTAGGAAAGAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACTTCGAAGGGAAAATACTTTAACAAAGGATTTGATCTTTTCATCACGACTGCACCAATACCAGATCTAAATGAAAAGCTTATTGTCTTTGGCCGAGTCATCAAGGGAGAGGATGTTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCAAAAATTTCTATTGGGATACTTGATGTGGTTCTTAGACAGATGGTGTGA 693 0.3867 MGRIKPQALLQQSKRKKGPSHISASTAIFYILIFVVLVYFLFATYRHWSKRTTLQPERYISVYEDENTIVESKKSDLPEYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHNRGPGATEDWNLLGKKYASMRHEAFMLGTSKGKYFNKGFDLFITTAPIPDLNEKLIVFGRVIKGEDVVQEIEEVDTDEHYQPKISIGILDVVLRQMV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00084 230 SUPERFAMILY Cyclophilin-like 77 226 IPR029000 -
Cca06g00084 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 230 - -
Cca06g00084 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 224 IPR002130 GO:0000413|GO:0003755
Cca06g00084 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 226 IPR002130 GO:0000413|GO:0003755
Cca06g00084 230 CDD cyclophilin 85 223 - -
Cca06g00084 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 230 - -
Cca06g00084 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Cca06g00084 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Cca06g00084 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Cca06g00084 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Cca06g00084 230 Gene3D - 64 229 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00084 Cca-Chr6 2074235 2079318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00084 80 226 U-box Gene Family AT5G67530 27.273 2.97e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00084 - - gmx:100796043 417.542