Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00082 ATGAACTCTCTCTTCTCACCTGAAAACCTCCCCCCACCGCCGGGAATCCCAATCCCCGCCACAATCGCCGGCTCCGCCGCGGCCCCAACACCAATACTAATCCCAAAGCTCGAACCTTTGGACGAATGGCTCAACACCCAACAACCTCAGGAACCCAATTTTTCAAACGGGTCCCTCGACCTCAACCTCTTGTGCGACGAAACCCCCGAAGACCCCACCACCAACAACTTGTACACCGAGTTCAACCGAATCTCCCACCTCTTCCACACCGCCTTCTCCAGCGGCCTCCAAAGCGACGCCGTTTCTGACCCCTTCTCCCAAAACTCCGCCGTTCCGGACCCCTCCGCCCTGCACCACCGCCAACCAAACGGCACCGCCGTCCCGGACCCGGATTCGCGGGCAATCGTGCCGGTCCCGGAGGAGGACGGCCCCTCTTCTTCCGCGGCGGGGGCGACCGCCACCACGCCGAGGCGCCGCTGCAAGGAGCTTGTTCGTGTGACGGATCTCGGCGGGGCGGAGCATCTCCACTTCCGCGACGTGGTCCGCCGCACGAGGATGGTGTACGACTCCCTGCGCGTGCTGGCCACGGAGGACGGCCCCTCTTCTTCCGCGGCGGTGGCGACCGCCACCACGCCGAGGCGCCGCTGCAAGGAGCTTGTTCGTGTGACGGATCTCGGCGGGGCGGAGCATCTCCACTTCCGCGACGTGGTCCGCCGCACGAGGATGGTGTACGACTCCCTGCGCGTGCTGGCCACGGTGGAGGACGAGCGGCGGGTGGACGCCCGCCGCGCGCGCTCCGACTTGCGCGCCTCGGCGGTGATGCGGAACTGCGGGTTGTGGCTTAACCGCGACAAGAGAATTGTTGGTGCAATTCCTGGCGTTTGCATTGGCGACGTTTTCCTTTATAGAATGGAACTGTGTGTGGTTGGATTGCACGGTCAGCCTCAGGCTGGGATTGATTATCTCCCTGCTAGCATGAGTTCCAATGGTGAGCCTATTGCCACCAGTGTCATTGTCTCTGGTGGGTATGAGGATGATGTTGATGAGGGTGATGTCATCATCTACTCTGGCCACGGTGGCCAGGACAAGCATTCTAGGCAGGTTTTTCACCAGAAGCTTGAGGGTGGGAACCTTGCCATGGAGAGGAGTATGTACTATGGGATTGAGGTGAGGGTTATTCGCGGTGTGCGGTATGATGGCACTTCCTCTGCCTCTGGGAAGGTCTATGTGTATGATGGCTTGTATAGGATTCTTGAGTGCTGGTTTGATGTTGGCAAGTCTGGTTTTGGGGTTTATAAGTATAAGCTCTGTAGGATTGATGGGCAGTCTAAGATGGGCAGCGCCATGATGAGGGAGGCGCTTATGCTTAGGAAGGATCCCTTGTGTTTCAAGCCCATGTGTTGTATGTCGCTTGACATTTCGAATGGGAAGGAGAGTGTGCCAGTTCGGCTTTTCAATGACATTGATAGGAACTATGACCCTCTTCGGTTTGAGTATCTTGTCAAGACGAATTTTCCGCAGTTTGTGTTTCATCAGAGTGGGAGGGGGACGGGTTGTGAATGTGTGGATGGGTGTGTTGAGGGGTGCTTTTGTGCTATGAAGAATGGAGGGGAGTTTTCTTATAATCAGAGTGGGATTCTCTTGAGGGGGAAGCCTTTGATTTTTGAGTGTGGCCCGTTTTGTAATTGTCCTCCTCATTGTCGTAACCGTGTCACGCAAAAGGGGCTCAAATATAGGTTGGAGGTGTTTAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAGGCTGGTGCTTTTATCTGTGAGTACACTGGGGTTTTTCTGACTAGGGAGCAAGCACAGCTTTTGACAATGAACGGGGATTCGTTGATATATCCTAATCGGTTTACTGATAGGTGGGCAGAATGGGGGGACTTGTCTCCGATAGACTCCAATTATGTGCGTCCATCGTATCCGGCAATCCCTCCTTTGGATTTTGCTATGGATGTGTCAAGAATGAGGAATGTTGCTTGTTATATGAGTCATAGTTCAGCTCCCAATGTGTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAAGTTTTGGGCATTGTTCACAGAGATAGTCAAGTTGATGCAGCATGA 2220 0.5428 MNSLFSPENLPPPPGIPIPATIAGSAAAPTPILIPKLEPLDEWLNTQQPQEPNFSNGSLDLNLLCDETPEDPTTNNLYTEFNRISHLFHTAFSSGLQSDAVSDPFSQNSAVPDPSALHHRQPNGTAVPDPDSRAIVPVPEEDGPSSSAAGATATTPRRRCKELVRVTDLGGAEHLHFRDVVRRTRMVYDSLRVLATEDGPSSSAAVATATTPRRRCKELVRVTDLGGAEHLHFRDVVRRTRMVYDSLRVLATVEDERRVDARRARSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMYYGIEVRVIRGVRYDGTSSASGKVYVYDGLYRILECWFDVGKSGFGVYKYKLCRIDGQSKMGSAMMREALMLRKDPLCFKPMCCMSLDISNGKESVPVRLFNDIDRNYDPLRFEYLVKTNFPQFVFHQSGRGTGCECVDGCVEGCFCAMKNGGEFSYNQSGILLRGKPLIFECGPFCNCPPHCRNRVTQKGLKYRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVFLTREQAQLLTMNGDSLIYPNRFTDRWAEWGDLSPIDSNYVRPSYPAIPPLDFAMDVSRMRNVACYMSHSSAPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEVLGIVHRDSQVDAA 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00082 739 Pfam SET domain 589 721 IPR001214 GO:0005515
Cca06g00082 739 ProSiteProfiles SET domain profile. 578 721 IPR001214 GO:0005515
Cca06g00082 739 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 30 200 - -
Cca06g00082 739 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 211 728 - -
Cca06g00082 739 Pfam Pre-SET motif 473 570 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca06g00082 739 Gene3D - 286 446 IPR036987 -
Cca06g00082 739 ProSiteProfiles YDG domain profile. 289 438 IPR003105 -
Cca06g00082 739 Pfam SAD/SRA domain 288 442 IPR003105 -
Cca06g00082 739 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 30 200 - -
Cca06g00082 739 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 211 728 - -
Cca06g00082 739 SMART G9a_1 284 442 IPR003105 -
Cca06g00082 739 SMART preset_2 470 562 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca06g00082 739 SMART set_7 578 727 IPR001214 GO:0005515
Cca06g00082 739 Gene3D SET domain 447 727 IPR046341 -
Cca06g00082 739 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 128 737 IPR025794 GO:0016571
Cca06g00082 739 SUPERFAMILY SET domain 463 722 IPR046341 -
Cca06g00082 739 SUPERFAMILY PUA domain-like 270 451 IPR015947 -
Cca06g00082 739 MobiDBLite consensus disorder prediction 101 156 - -
Cca06g00082 739 ProSiteProfiles Pre-SET domain profile. 517 575 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00082 Cca-Chr6 2008249 2016349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00082 234 723 Su(var)3-9 homologs AT5G04940 39.437 3.73e-105 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca06g00082 SAD_SRA 3.3e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00082 K11420 - gmx:100795514 1052.74