Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00081 ATGTCTTCTCAAGGCCATGGCATCCACTTTTTCAAAGTTATTCTTGAAAGCACCCTTCAAAAAGGAGAACTGAAAGTGCCGACGAGTTTTGCGAGAAGGCATTGGCAAGGAATGTTGAATCCTGTTATTCTAAGTCTCCCAAACGGCGCCAAAAAGAAGGTTTATTGGCTGAGGCATGATGGCGATGTTTGGTTTTGCAATGGTTGGAAGGAATTTGCAACATATTCGCGTTTGGAAGCGTCACATTTTGTGGTGTTTCGATACGAAGGAAATTCCTCCTTCAACGTGATTATTTTTGGGAAAAGCGCGGTGGAAGTGGAATACCCTTTAAGCAGTGATAGTAATGAAGAAGTGGAAGAGACTCATGGCACTGATAAAAATGTTGAAGAGCGTTCATCACACAAGGGTAAAAGGAAAAAATCTCCATCACCATTATCTAGAACTAGTAAGAAGATTCAAATAAGCCCAAAAATAGAAGTAGAAGAAGAAGATCAACTGAATCATTGGAAGAAGAAAGCTGGTTTAGATAATTCCAAGTATATTCATAATGGTTGGTTTTATTCACTTTTATTTTTTTTTATTCATAGAGATTATGACAGGAGTATCAGAAACTTTCACGAGAAAGTAAAGACAATGTTCCACTCTGAGAATGAACATTTCACATGTGCAATCCAAAAAACATACATTGAAAGAGATCTATTGGATGGTGCTACTCTTTTTATTGAAGATGGCAGAACTTGGGATGTTGAGTTAAAGGTCAATTACTGTGGACAATTGACATTTTCCATTGGCTGGAAGAAATTTTCGCAGGATAATGAATTGAAAGTTGGTGATGTTTGTGGTTTTGAGCTACACAAATATAAAGGATTTTCATTCAAAGTTACTGTTTTTCGTTTCGAAGAGGACTCAAGCACTCCCCTCTTCATAGGACTTTCACATAGGCCTTCATCATCCTTTAAAACCTCTGTGACACCTAAAGCCAGCACATCAAAGCCGAAGGATGATCTCTGCATCATTTTGAAGCCTCCAATCAACTCACCGACAGTGCCTTTTAACTACATCAAGAGGTACGTTAAAGAGAATGGAAGATACGTGACCTTTCATGTTGGACTTAGATCGTGGCGCGTAAAATTGCTCTTTTACGAGCAAAATTTTACTTCCAAATTCTCTTCTGGGTGGGTTAAATTTATGAGGGATTGTAACTTGAAAGAGGGTGACACTTGTGTCTTTAAGATGATAGATGAGGAAAATCTAGAGTTCGAAGTTTCTTCTCTAAATGGAAAAAAATTGATGGATACACCTATGAGCTTATTGAGTCAGAAGAGGGAGAAATACAAATGA 1341 0.3788 MSSQGHGIHFFKVILESTLQKGELKVPTSFARRHWQGMLNPVILSLPNGAKKKVYWLRHDGDVWFCNGWKEFATYSRLEASHFVVFRYEGNSSFNVIIFGKSAVEVEYPLSSDSNEEVEETHGTDKNVEERSSHKGKRKKSPSPLSRTSKKIQISPKIEVEEEDQLNHWKKKAGLDNSKYIHNGWFYSLLFFFIHRDYDRSIRNFHEKVKTMFHSENEHFTCAIQKTYIERDLLDGATLFIEDGRTWDVELKVNYCGQLTFSIGWKKFSQDNELKVGDVCGFELHKYKGFSFKVTVFRFEEDSSTPLFIGLSHRPSSSFKTSVTPKASTSKPKDDLCIILKPPINSPTVPFNYIKRYVKENGRYVTFHVGLRSWRVKLLFYEQNFTSKFSSGWVKFMRDCNLKEGDTCVFKMIDEENLEFEVSSLNGKKLMDTPMSLLSQKREKYK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00081 446 Pfam B3 DNA binding domain 370 422 IPR003340 GO:0003677
Cca06g00081 446 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Cca06g00081 446 Pfam B3 DNA binding domain 239 298 IPR003340 GO:0003677
Cca06g00081 446 SUPERFAMILY DNA-binding pseudobarrel domain 215 299 IPR015300 -
Cca06g00081 446 ProSiteProfiles B3 DNA-binding domain profile. 372 428 IPR003340 GO:0003677
Cca06g00081 446 MobiDBLite consensus disorder prediction 115 136 - -
Cca06g00081 446 ProSiteProfiles B3 DNA-binding domain profile. 233 300 IPR003340 GO:0003677
Cca06g00081 446 MobiDBLite consensus disorder prediction 114 152 - -
Cca06g00081 446 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Cca06g00081 446 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 347 423 - -
Cca06g00081 446 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 298 - -
Cca06g00081 446 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Cca06g00081 446 CDD B3_DNA 242 298 IPR003340 GO:0003677
Cca06g00081 446 PANTHER B3 DOMAIN-CONTAINING 347 423 - -
Cca06g00081 446 PANTHER B3 DOMAIN-CONTAINING 6 298 - -
Cca06g00081 446 SUPERFAMILY DNA-binding pseudobarrel domain 347 422 IPR015300 -
Cca06g00081 446 Gene3D - 312 427 IPR015300 -
Cca06g00081 446 Gene3D - 202 302 IPR015300 -
Cca06g00081 446 CDD B3_DNA 372 423 IPR003340 GO:0003677
Cca06g00081 446 Gene3D - 3 103 IPR015300 -
Cca06g00081 446 SMART B3_2 208 300 IPR003340 GO:0003677
Cca06g00081 446 SMART B3_2 10 102 IPR003340 GO:0003677
Cca06g00081 446 SMART B3_2 336 426 IPR003340 GO:0003677
Cca06g00081 446 CDD B3_DNA 9 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00081 Cca-Chr6 1997068 2000505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00081 10 165 B3 DNA Binding Superfamily AT4G01580 33.125 2.41e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca06g00081 B3 2.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00081 - - ccaj:109818925 549.666