Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00080 ATGACTTCTCAAAATCGTGATCAAGATTGTGATAACATCCATTTTTTCAAGGTTATTCTTGAAGGTACCCTTCGAGATGGAAAAATGATGATTCCTAGGAGTTTTGTGAAGCGATATGGGGAAGAGTTATTAAACCCAGTAATGCTGAAGCTCCCAAATGGTGCTAAATGGGAAGTACATTGGACAAAATGTGACCATGATGATATTTACTTTGAGAAAGGTTGGGAAAATTTCGCAAAACACTATTCCCTTAGTAATGGGCACTTCTTAGTTTTTAGATATGAAGGAGGATCTCAATTTCAAGTTCTTATATTTGATGGGAGTGCTTTGGAAATAGACTATCCAACAAGTAACAGTAGCACACATCATGCTGAAGGGACCAACACATCTCATGAAGATGTTGAAGAGATTGATGATGACTCTCCATTACCTAGAAAACAGAAAGCCAATCCAGGGGCTAGGAGAGGAAGGTGGGTGAATGGTAAAATTGGGTCAAGAAATGAATGTAACAGATACAGGAGAAAGAAGAAGGCACATGAAGGCAATGAAGGAAACAAAGCTTCAGAGAGAGCCAATATGTTCAAATCTAATCATCCCTTTTTCACTCGTCATTTGTTTCAATCATACATCCAACATTACTTGGTTCTACCAACAACTTTTTCCAGAAAATATATGAAAGGGTTGGAAGAAGGGAGTGCAAGCCTTGTGATTTTGCATTCAATGTTACTATTTTTCGAAACACCTAAGTATCAAGCTCGGAGCAATTTCAAGATTTTGAAAGTCCCAGTATGA 792 0.3775 MTSQNRDQDCDNIHFFKVILEGTLRDGKMMIPRSFVKRYGEELLNPVMLKLPNGAKWEVHWTKCDHDDIYFEKGWENFAKHYSLSNGHFLVFRYEGGSQFQVLIFDGSALEIDYPTSNSSTHHAEGTNTSHEDVEEIDDDSPLPRKQKANPGARRGRWVNGKIGSRNECNRYRRKKKAHEGNEGNKASERANMFKSNHPFFTRHLFQSYIQHYLVLPTTFSRKYMKGLEEGSASLVILHSMLLFFETPKYQARSNFKILKVPV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00080 263 MobiDBLite consensus disorder prediction 116 160 - -
Cca06g00080 263 Gene3D - 7 109 IPR015300 -
Cca06g00080 263 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 235 - -
Cca06g00080 263 Pfam B3 DNA binding domain 21 107 IPR003340 GO:0003677
Cca06g00080 263 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Cca06g00080 263 PANTHER B3 DOMAIN-CONTAINING 7 235 - -
Cca06g00080 263 CDD B3_DNA 14 106 IPR003340 GO:0003677
Cca06g00080 263 Gene3D - 180 247 IPR015300 -
Cca06g00080 263 SUPERFAMILY DNA-binding pseudobarrel domain 10 107 IPR015300 -
Cca06g00080 263 SMART B3_2 15 108 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00080 Cca-Chr6 1960885 1964510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00080 15 143 B3 DNA Binding Superfamily AT1G49475 39.568 4.02e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca06g00080 B3 7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00080 - - ccaj:109818927 444.121