Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00072 ATGTCAGAATCAAACGCAATTGCAAATGGTTTGGCTGGTGCAGGTGGTGGAATTATTGCTCAAATCATAACTTATCCTCTTCAAACGGTAAACACGCGCCAGCAAACTGAGAGAACACTCAAAAGGAACAAGCAAAGTTTGCTTCCACAGTCCTCCAACTCGACCAAAGCTCCTGGCACTCTTCTTCAGATCTTTCAGGTCATTGGAAGTGAGGGTTGGGGTGGACTCTATAGTGGCCTCAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGCATTTACTATTATTTCTATCAAGTTTTCAAGAACAAGGCTGTGGCCATTGCAGCTGCGCGGAAAGTGAAAGGGCATGGAGATGGTACTGTTGGGATGTTTGGTTGGCTTGTTGTGGCTGCAATTGCTGGGTCCTTGAATGTATTGCTGACAAACCCAATATGGGTTTTGGTTACTCGGATGCAGACTCATACTCAAGCAGAAAAGAAAATCATGGAGGAAAAGAAAGAAGATTTAAGGAGGGCAGCTTCTGAAAGCACCATAGCAGGCTCAACATTACAAGACAATTTGGCTGAACTGAATTCCATAAAACCTCGTCCATATGGAACTATACATGCAGCTAACGAAGTATACAATGAAGCGGGTATAGTTGGATTTTGGAAGGGTGTCATCCCTGCCCTTATTATGGTATGCAATCCGTCAATTCAGTTTATGATTTATGAGAGCTCATTACAGCATCTAAGGGCAAAACGCGCTGCTAAGAAGCAAGGGGATACAAGTATATCTGCTTTGGAGGTCTTTTTGGTGGGAGCAATAGCAAAACTTGGAGCCACTGTCTCAACATATCCATTACTAGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAGTAGCTCATTAAGATACTCAGGTACTTTTGATGCGGTACTTAAAATGATCCGCTATGAAGGATTACCTGGCTTTTATAAGGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCAGCTTCTGTTCTATTCATGGTTAAGGAAGAGCTTGTTAAGGCTTTTATGGTGCTAGCAGATAAAAGCAAGAAAGTTGTATCAAATATGAGTAGTTGA 1104 0.4257 MSESNAIANGLAGAGGGIIAQIITYPLQTVNTRQQTERTLKRNKQSLLPQSSNSTKAPGTLLQIFQVIGSEGWGGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAVAIAAARKVKGHGDGTVGMFGWLVVAAIAGSLNVLLTNPIWVLVTRMQTHTQAEKKIMEEKKEDLRRAASESTIAGSTLQDNLAELNSIKPRPYGTIHAANEVYNEAGIVGFWKGVIPALIMVCNPSIQFMIYESSLQHLRAKRAAKKQGDTSISALEVFLVGAIAKLGATVSTYPLLVVKSRLQAKQEIGGSSSLRYSGTFDAVLKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAFMVLADKSKKVVSNMSS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00072 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 259 350 IPR018108 -
Cca06g00072 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 104 IPR018108 -
Cca06g00072 367 Gene3D Mitochondrial carrier domain 174 366 IPR023395 -
Cca06g00072 367 Pfam Mitochondrial carrier protein 259 352 IPR018108 -
Cca06g00072 367 Pfam Mitochondrial carrier protein 4 103 IPR018108 -
Cca06g00072 367 Pfam Mitochondrial carrier protein 122 246 IPR018108 -
Cca06g00072 367 SUPERFAMILY Mitochondrial carrier 5 346 IPR023395 -
Cca06g00072 367 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 4 360 IPR044712 GO:0006862|GO:0055085
Cca06g00072 367 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 4 360 - -
Cca06g00072 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 244 IPR018108 -
Cca06g00072 367 Gene3D Mitochondrial carrier domain 1 169 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00072 Cca-Chr6 1786369 1791771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00072 26 351 Chloroplast and Mitochondria Gene Families AT1G25380 25.826 3.90e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00072 K13354 - gmx:100777898 634.795