Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00069 ATGAGTTCGCGAACGGCGAGGAGCACGCGGCGGAGGAAGATGAATTTGGAGCTCGACCTCAACCGTGATCCACCCGCCGAGAATGTTCGGGAAGAGGAGGAGGGACCCTCCACGCAGCATCAACAACAGCAACTTCCCATGATTGACGTCGAAGCCATTGATGACGATGTTGTAGAATCTTCACCTAGGTCTTTCGCGCAGGCTAAGAGCAATAATGCGAGGAGGAGAGTTCGCAGGAGGATGGTTGTTGATGTGGACTTAGAAGAAGAGACAAGAGGTGATCCCCAAAACCAAACAATCATCAATGGTGCTCTTTATATAAATTTGGAAAGCAGTAGCTGTTCTGTGTGTGAAAATGCTAGGAAGTCACCTGAATGTCCTAAGGAGCCTCCTAAGGAGCCTGTATTTAATTGTCCAATATGTATGGCTCCTTTGGTAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATTAAAGCGGCTGTAGCTGTACAGGGTAAATGCCCTACATGTAGAAAGAAGGTTACAAAGAACCAGCTAATAAGGGTGTTTCTTCCAGCAACTAGTTAA 582 0.4605 MSSRTARSTRRRKMNLELDLNRDPPAENVREEEEGPSTQHQQQQLPMIDVEAIDDDVVESSPRSFAQAKSNNARRRVRRRMVVDVDLEEETRGDPQNQTIINGALYINLESSSCSVCENARKSPECPKEPPKEPVFNCPICMAPLVEEMSTRCGHIFCKNCIKAAVAVQGKCPTCRKKVTKNQLIRVFLPATS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00069 193 MobiDBLite consensus disorder prediction 1 46 - -
Cca06g00069 193 MobiDBLite consensus disorder prediction 10 37 - -
Cca06g00069 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 189 IPR013083 -
Cca06g00069 193 SUPERFAMILY RING/U-box 133 188 - -
Cca06g00069 193 Pfam Ring finger domain 137 176 IPR001841 -
Cca06g00069 193 ProSiteProfiles Zinc finger RING-type profile. 138 176 IPR001841 -
Cca06g00069 193 PANTHER ELFLESS, ISOFORM B 2 193 - -
Cca06g00069 193 SMART ring_2 138 175 IPR001841 -
Cca06g00069 193 ProSitePatterns Zinc finger RING-type signature. 153 162 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00069 Cca-Chr6 1709138 1713644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00069 4 192 C3H Transcription Factor Family AT5G48655 46.890 2.41e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00069 K22651 - gmx:100778432 248.825