Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00068 ATGGCTAACGTTAACGCGACGGTTCCGTTTCCCTCAAACCTTTTGCCAAACGAAGGAAGCCCGGAATGGATGAGCAAAGCAGACAATGCATGGCAGCTGATAGCTGCAACACTGGTGGGGTTGCAAAGCGTTCCAGGGCTCATAATTTTGTACGGTGGAGCAGTGAAGAAGAAATGGGCAGTGAACTCAGCGTTCATGTCGCTGTATGCTTTTGCTTGTGTGTTTTTCTGTTGGGTTGTGTGGGGATACAGAATGTCCTTTGGTGACCAGCTTCTTCCTTTCTGGGGAAAGCCAGCTATGTCCTTGGAACAAGCTTATCTTTTTAAGCCTGCGTTTCTGGGGCTCTTCCCGAATGCCACCATGGTCTATTTCCAGTGTGTGTTTGCTGCCATTACTTTGATTCTCATTGCTGGGGCTCTCTTGGGTCGCATGAACTTCTATGCTTGGATGTTGTTTGTGCCCTTGTGGCTCACATTCTCCTACACCTTCACAGCCTACAGCATTTGGAGCCCTGCTGGCTTTTTGTCCACCATGGGGATCATTGACTACTCTGGTGGCTATGTCATCCATTTGTCTTCCGGGGTTGCTGGATTCACAGCTGCATTTTGGGTTGGACCACGGCTAAACAAGGACAGGGAAAGGTTCCCTCCAAACAACATCCTTCTTATGCTGGCAGGGGCAGGGATGTTGTGGATGGGATGGACTGGCTTCAACGGGGGAGATCCATACTCAGTGGGTTTAGATGCTTCCCTCGCCGTCCTCAACACTCATGCTTGCACTGCCACCAGCTTGCTCACTTGGGTCATCCTTGATGTCATCTTTTTCCGAAAGCCTTCTGTCATTGGAGCCGTTCAAGGCATGATCACTGGTTTGGTTTGCATTACCCCAGCTGCAGGAGTTGTGCAGGGATGGGCAGCACTTATAATGGGAGTCCTCTCAGGCTCAATTCCTTGGGTCACCATGATGGTGATCCATAAGAGATCAAAGCTACTGCAGAAGGTTGATGATACAATGGCAGTGTTTCACACACATGCTATTGCAGGAACCCTAGGAGGACTCCTCACTGGACTCTTTGCTAATCCAAAGCTTAACAAGATTTTCTATGGAAATTATTTAAAATACGTTGGTTTATTTTATGGCCTCCATGACAAAAGGCCCATGGTCGGGTTCAGGCAAATGGGAGTCCAAATCCTTGGGATTCTCTTTGTTATCGTTGTTAATGTTATCAGCACAAGCTTGATTTGCCTCTTCATTAGACTTTTTGTTCCGTTGAGAATGTCTGAAGAGGATATGGAGATAGGTGATGAGGCTGCTCATGGAGAAGAAGCTTATGCCATCTGGGGTCAGGGCGATAAGCTTGAAAATTCAAGTTCAAAGTATGGAAGTTCATTATACGATGATGTTGAAGCTGCAGCCCCTAAGAAGAAGCGCTGTGGCACGGTTGAGATGATTTAA 1455 0.4749 MANVNATVPFPSNLLPNEGSPEWMSKADNAWQLIAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVVWGYRMSFGDQLLPFWGKPAMSLEQAYLFKPAFLGLFPNATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAYSIWSPAGFLSTMGIIDYSGGYVIHLSSGVAGFTAAFWVGPRLNKDRERFPPNNILLMLAGAGMLWMGWTGFNGGDPYSVGLDASLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVLSGSIPWVTMMVIHKRSKLLQKVDDTMAVFHTHAIAGTLGGLLTGLFANPKLNKIFYGNYLKYVGLFYGLHDKRPMVGFRQMGVQILGILFVIVVNVISTSLICLFIRLFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYDDVEAAAPKKKRCGTVEMI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00068 484 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cca06g00068 484 TIGRFAM amt: ammonium transporter 28 444 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca06g00068 484 Gene3D Ammonium transporter AmtB like domains 14 462 IPR029020 -
Cca06g00068 484 PANTHER AMMONIUM TRANSPORTER MEP2 8 484 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cca06g00068 484 Pfam Ammonium Transporter Family 30 444 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cca06g00068 484 PANTHER AMMONIUM TRANSPORTER 8 484 - -
Cca06g00068 484 PRINTS Rhesus blood group protein signature 125 141 IPR002229 GO:0005887
Cca06g00068 484 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005887
Cca06g00068 484 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005887
Cca06g00068 484 SUPERFAMILY Ammonium transporter 23 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00068 Cca-Chr6 1660380 1662666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00068 119 474 Inorganic Solute Cotransporters AT2G38290 62.079 2.73e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00068 K03320 - gmx:100787856 868.996