Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00066 ATGAGTTCCAATTCCAACAAGAGTACACTTCCCAAGGAAGCAGGAAAGGTGGATGATGCTTACCTCTCTGCTATGTTACTTTGCTTTAGCCGGATCCTCCCTGCAGCTCTAAATGCTGCTATTGATATCAATTTGTTTGATATTGTTGCAAAGGCAGAGAGTTCATGTCATGCATCTTTATCTGCCTCTCAAATTGCTTCTTTGCTTCCAAATCAACCCCCTCAATTGCCTAATAGGCTTGAACGCATCTTGCCACTTCTAGCCAGTTATTCTCTTCTGGATTGCTCCATTCGAACCAATCAAGATGGTAAGACAGAAAGAGTTTATGCTCTCTCACCCGTTGGCAAATACTTTGCTTTTGATAATGATGGAATCTCTGTGGCTCCTTTCACAACTTTAATGAATCGCGTATTTCATGACCTATGGACGGATGTGAAGGATGCAATTGTGGATCCTAATTGCAATAACCATTTCGAAAGTGTCTATGGAATGCCATCATTTGAATATATGGGGAGAAATGAGGAGCTGAATGACATGTTTAACAAAGCAATGGCTCACACTGGCCCAATAGAAACTAAAATGGTACTCAACTCATACAAAGGATTTGAAGGAGTTTCAACACTGGTTGATGTAGGAGGTGGAGTTGGAGGGACCTTAAAACTAATTCTCTCTGCATATCCTTCGATTAAAGGAATTAATTTTGATTTGCCTCAGACGATTGAGGATGCACCACCTCATCCAGGTATAAAGCATATTGGAGGAGATATGTTTGAAAGTGTTACAAATGGTGATGCCATTTTACTAAAGTATATATGTCATAATTGGCCAGATGAAGATTGTGTAAAGTTTTTAAGAAATTGTCACAAAGCCTTGCCACCACATGGAAAAGTGATTGTTTTGGATGTTATTATTTCTGAGGTCCCGAATTCAAGCAACACATCTAAGCGCACTTTTATTGTTGATAGTCACATGTTTTTATCACATGGTGGAAAGGAAAGAACTGAGAATGAATTTGAGAAGTTGTGCAAGAGCTCTGGTTTTTCCAAATTTCATGTTGCATGTAATGATATCCCAGGTATACGCTAG 1086 0.3923 MSSNSNKSTLPKEAGKVDDAYLSAMLLCFSRILPAALNAAIDINLFDIVAKAESSCHASLSASQIASLLPNQPPQLPNRLERILPLLASYSLLDCSIRTNQDGKTERVYALSPVGKYFAFDNDGISVAPFTTLMNRVFHDLWTDVKDAIVDPNCNNHFESVYGMPSFEYMGRNEELNDMFNKAMAHTGPIETKMVLNSYKGFEGVSTLVDVGGGVGGTLKLILSAYPSIKGINFDLPQTIEDAPPHPGIKHIGGDMFESVTNGDAILLKYICHNWPDEDCVKFLRNCHKALPPHGKVIVLDVIISEVPNSSNTSKRTFIVDSHMFLSHGGKERTENEFEKLCKSSGFSKFHVACNDIPGIR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00066 361 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 355 - -
Cca06g00066 361 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Cca06g00066 361 Gene3D Vaccinia Virus protein VP39 120 357 IPR029063 -
Cca06g00066 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 361 IPR016461 GO:0008168
Cca06g00066 361 SUPERFAMILY "Winged helix" DNA-binding domain 18 122 IPR036390 -
Cca06g00066 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 354 IPR029063 -
Cca06g00066 361 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Cca06g00066 361 PANTHER O-METHYLTRANSFERASE 1 355 IPR016461 GO:0008168
Cca06g00066 361 Gene3D - 2 118 IPR036388 -
Cca06g00066 361 CDD AdoMet_MTases 238 304 - -
Cca06g00066 361 Pfam O-methyltransferase domain 142 348 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00066 Cca-Chr6 1583372 1602431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00066 18 355 Monolignol Biosynthesis Gene Families AT5G54160 50.292 6.58e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00066 K13066 - gmx:106794104 505.368