Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00065 ATGAGTTCCAATTCCAACAAGAGTACACTTCCCAAGGAAGCAGGAAAGGTGGATGATGCTTACCTCTCTGCTACGTTACTTTGCTTTAGCCGGATCCTCCCTGCAGTTCTAAATGCTGCTGTTGATATCAATTTGTTTGATATCATAGCAAAGGCAGAGAGTTCATGTCATGCATCTTTATCTGCCTCTCAAATTGCTTCTTTGCTTCCAAATCAACACCCTCAATTGCCTAATAGGCTTGAACGCATCTTGCCACTTCTAGCCAGTTACTCTCTTCTGGATTGCTCCATTCGAACCAATCAAGATGGTAACAAAGAAAGAGTTTATTCTCTCTCCCCCGTTGGCAAATACTTTGCATTTGATAATGATGGAATCTCTTTGGCCCCTCTCACAACTTTAATAAATCGCGGATTTCATGACCTATGGACGGATGTGAAGGATGCAATTGTGGATCCTAATTGCTATAACCATTTCGAAAGTGTCTATGGAATGCCATCATTTGAATATATGGAGAGAAATGGGGAGCTGAATGACATGTTTAACAAAGCAATGGCTCACGCTGGCCCAATAGAAACTAAAATGGTAATCAACTCATACAAAGGATTTGAAGGAGTGTCAACACTGGTTGACGTTGGAGGTGGAGTTGGAGAGACCTTAAAACTAATTCTCTCTGCATATCCTTCAATTAAAGGCATTAATTTTGATTTGCCTCAGATGATTGAGGATGCACAACCTCATCCAGGTATAGAGCACATCGGAGGGTCTATGTTTGAAACTGTTCCAAATGGTGATGCCATATTACTAAAGTATGTATGTCATAATTGGTCAGATGAAGATTGCATAAAGTTTTTAAGAAATTGTCACAAAGCTTTGCCACCACATGGAAAAGTGATTGTTTTGGATCTTATAACCCCAGAGGTCCCGAATTCCAGCGGCACATCTAAGCGTACTTGTGTTGTCGATAATCACATGTTTTTATCACATGGTGGAAAGGAAAGAACTGAGAATGAGTTTGAGAACTTGTGCAAGAGGTCTGGTTTTTCCAAATTTCATGTTGCATGTAATGATATCCCAGGTGCGGTGGGAGTGATGGAATTTTATAAATAG 1107 0.4029 MSSNSNKSTLPKEAGKVDDAYLSATLLCFSRILPAVLNAAVDINLFDIIAKAESSCHASLSASQIASLLPNQHPQLPNRLERILPLLASYSLLDCSIRTNQDGNKERVYSLSPVGKYFAFDNDGISLAPLTTLINRGFHDLWTDVKDAIVDPNCYNHFESVYGMPSFEYMERNGELNDMFNKAMAHAGPIETKMVINSYKGFEGVSTLVDVGGGVGETLKLILSAYPSIKGINFDLPQMIEDAQPHPGIEHIGGSMFETVPNGDAILLKYVCHNWSDEDCIKFLRNCHKALPPHGKVIVLDLITPEVPNSSGTSKRTCVVDNHMFLSHGGKERTENEFENLCKRSGFSKFHVACNDIPGAVGVMEFYK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00065 368 Pfam Dimerisation domain 36 88 IPR012967 GO:0046983
Cca06g00065 368 Gene3D - 2 118 IPR036388 -
Cca06g00065 368 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 368 - -
Cca06g00065 368 PIRSF O-mtase 1 368 IPR016461 GO:0008168
Cca06g00065 368 SUPERFAMILY "Winged helix" DNA-binding domain 18 122 IPR036390 -
Cca06g00065 368 PANTHER O-METHYLTRANSFERASE 1 368 IPR016461 GO:0008168
Cca06g00065 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 357 IPR029063 -
Cca06g00065 368 CDD AdoMet_MTases 207 299 - -
Cca06g00065 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 368 IPR016461 GO:0008168
Cca06g00065 368 Gene3D Vaccinia Virus protein VP39 120 368 IPR029063 -
Cca06g00065 368 Pfam O-methyltransferase domain 142 348 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00065 Cca-Chr6 1535082 1537211 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00065 18 368 Monolignol Biosynthesis Gene Families AT5G54160 47.175 6.26e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00065 - - gmx:106794104 559.296