Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00062 ATGGGTTCCAATTCCAAACAAAGTCAAATTCCTCCGCAAGTAGCAAAGGTCGACGATGATGCTTACCTCTGTGCTGCTTTACTTTCTCTTAGCCAGGTCTTCCCTGCAGTTCTAAATGCTGCTATTGATATCAACTTGTTTGATATCATAGCAAAGGCACAGAGTTCACGTGATTCATCTTTTTCTGCCTCTCAAATTGCTTCTTTGCTTCCAAATCAACACCCTCAATTGGCTAATAGGCTTGAACGCATCTTGCCACTTCTAGCCAGTTATTCTCTTCTAGATTGCTCCATTCGAACCAATCAAGATGGTAAGACAGAAAGAGTTTATGCTCTCTCACAGGCTGGCAAATACTTTGCATTTGATAACGATGGAAGCTCTCTAGCTCCTCTCACAACTTTAGTACATCACGGATATCATGATCTTTGGAAGAATGTGAAGGATGCAATTGTGAACCCTAATAGCAATATCCATTTCGAAAATGTCTATGGAATGCCTCCATTTGAATATATGGAAAGAAATGCAGAGCTGAATCAGAGTTTTTACAAAGCAATGGCTCACTTTGACCCACTACAGGTGAAAAGGGTACTCAAATTCTATAAGGGGTTTGAGGGAGTGTCAACACTTGTTGATGTGGGAGGTGGAATAGGCGAGACCTTAAAACAGATTGTCTCTGCATATCCTTCAATTAAAGGAATTAATTTTGATTTGCCTCAGATGATTCAAGATGCACCACCTCTTCCAGGTATAGAGCATATCGGAGGATCTATGTTTGAAAGTGTTCCAAATGGTGATGCCATTTTACTCAAGCATGTCTGTCACAATTGGTCAGATGAAGATTGTATCAAGTTTTTAAAGAATTGTCACAAAGCTTTGCCACCACATGGAAAAGTGATTGTTTGGGAACATATGGTTCCAGAGATCCCAAGTTCAAGCAATACATCTAAGCACACTTGTTCCGTGAGCAATCTCATGTTTTTAGCACATGGTGGAAAAGAAAGAACTGAGAATGAATTTAGAAACTTGTGCAAGAGTTCTGGTTTTTCCAAGTTTCATGTTGCATGCAGTGATCTCTCTGCTTCGTCAGAAGTGGTGGAATTTTATAAATAG 1110 0.3982 MGSNSKQSQIPPQVAKVDDDAYLCAALLSLSQVFPAVLNAAIDINLFDIIAKAQSSRDSSFSASQIASLLPNQHPQLANRLERILPLLASYSLLDCSIRTNQDGKTERVYALSQAGKYFAFDNDGSSLAPLTTLVHHGYHDLWKNVKDAIVNPNSNIHFENVYGMPPFEYMERNAELNQSFYKAMAHFDPLQVKRVLKFYKGFEGVSTLVDVGGGIGETLKQIVSAYPSIKGINFDLPQMIQDAPPLPGIEHIGGSMFESVPNGDAILLKHVCHNWSDEDCIKFLKNCHKALPPHGKVIVWEHMVPEIPSSSNTSKHTCSVSNLMFLAHGGKERTENEFRNLCKSSGFSKFHVACSDLSASSEVVEFYK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00062 369 Pfam O-methyltransferase domain 143 349 IPR001077 GO:0008171
Cca06g00062 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 356 IPR029063 -
Cca06g00062 369 CDD AdoMet_MTases 208 301 - -
Cca06g00062 369 Gene3D Vaccinia Virus protein VP39 178 356 IPR029063 -
Cca06g00062 369 Gene3D - 33 196 IPR036388 -
Cca06g00062 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 369 IPR016461 GO:0008168
Cca06g00062 369 PIRSF O-mtase 3 369 IPR016461 GO:0008168
Cca06g00062 369 PANTHER O-METHYLTRANSFERASE 1 369 IPR016461 GO:0008168
Cca06g00062 369 SUPERFAMILY "Winged helix" DNA-binding domain 20 123 IPR036390 -
Cca06g00062 369 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 369 - -
Cca06g00062 369 Pfam Dimerisation domain 37 89 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00062 Cca-Chr6 1387391 1390050 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00062 1 355 Monolignol Biosynthesis Gene Families AT5G54160 47.207 7.16e-108 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00062 - - gmx:106794104 561.607