Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00055 ATGGCTGGTCAACTCAGTTTTGTAGTGGGATCCCACGTTTGGATTGAGGATCCAGAAGTAGCTTGGATAGATGCAGAAATCCAGGAATCTAAACAGGATGAGATCACGGTTATCTATGAATCAGGCTCGAGGGTTGTGAGCAAATCAGCTACCATGTATCCCAAAGATCCAGAATTCCCACCTAATGGTGTGGAAGATATGACAAGACTGGCATATCTGCATGAACCAGGAGTTCTTCGGAATTTGCATGTTCGATATGCCATAAATGAAATTTATACATACACAGGAAATATATTGATAGCTGTGAACCCTTTTCAAAGGTTACCTCATTTGTCTGAAACTAGTACCATGGCAAGGTATAAAGGTGCGGCTTTTGGTGAGCAGAGCCCACATCCTTTTGCAATTGCAAGTTCTGCATATAGCAAGATGATAAACGAAGAAAAAAGTCAATCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACAGAAAGTACAAAGATGCTTATGCATTATCTTGCCTTTTTGGGAGGGAGAGCAGCAACTGAAGGACGGTCTGTGGAGCAACAAGTTCTGGAGTCCAATCCTGTTTTAGAAGCTTTTGGCAATGCAAAGACTGTTAGGAACAACAATTCGAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGTTCCCGTGTCTGTCAAGTTTCTGATCCCGAGAGAAATTACCATTGCTTTTATATGCTTTGTGCTGCACCAAAAGAGGATGTTGGTAAGTACAAATTGGGAAATCCAAGAAAATTTCATTACCTTAATCAATCAAATTGTATTGAGCTGGATGGGGTGGATGATTCTAAAGAGTACATTGCTACTAAGAGAGCTATGGAGGTTGTTGGGATCAGCTCTGATGAGCAGGATGCTATATTTCGAATAGTAGCAGCAGTGCTTCATTTAGGAAACATTGAATTTGTTAAAGGTGGGGAAGAGGAACTGGATTCCTCTCAGCCCAAGGATGAAAATTCCCATTACCACCTAAAAGTCGCAGCTGAGCTTTTGATGTGTGATGAGAAGTCCCTTGAAGCCTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCGCTTGATCCAACTTCTGCAGCTCTCAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGGCAAGATCCAGATTCAAATAACTTGATCGGGGTTCTAGATATATATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTTTGTATCAATTTGACAAATGAGAAATTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATTGATTGGAGTTATATCGAGTTCGTTGATAATCAAGATGTTCTTGATCTCATAGAGAAGAAACCCGGTGGCGTTATTGCTCTCCTGGATGAGGCCTGCATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATATCAAACATTTAAAGACAACAAACGCTTCAGCAAGCCAAAATTGTCTCGCACTGACTTCACCATTAACCACTATGCCGGAGACGTAACTTATCAAACTGATTTTTTCCTAGATAAAAATAAAGACTACGTTGTTCCAGAGCATGCTGCTCTGCTCAGTGCTTCGAAGTGTCCCTTTGTTTCAGGGCTGTTCCCACCTTTACCAGAGGAAACTACAAAATCAACGAAGTTCTCTTCTATAGCCACCCAATTTAAGCTACAACTGCAATCTTTGCTTGAAACACTAAATGCTACCGAGCCACACTACATTCGGTGTGTAAAGCCAAATAATCTTCTGAAGCCAGGGATATTCGAGAACAATAATGTGTTGCAGCAGCTTCGATGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACTAGAAAGAGTTTTGATGAATTTGTTCAGCGGTTTACTATCCTGGAACCTAAGGTTCTGAAAGCATGCCCTGATGAGATGACTGCTTGCAAGAGGCTTCTAGATAGAGCAAACCTTAAAGATTATCAGATTGGAAAAACAAAAGTGTTTCTGAGAGCAGGTCAAATGGCAGAACTTGATGCATGTCGTGCTGAGGTCTTGGGAAGATCTGCAAGTGTTATTCAGAGAAAAGTCCGCACGTTTCTTTGTCGGAAACACTTCATTTTATTGAAGTATTCTGCCACAGAACTTGAAAGGGTTGCTAGAGGACAACTTGCACGACATCAGTATGAATGCATGAGGAGGGAAGCTGCTTCTTTGAAAATCCAAAAAGACTTCCGCATGTATATTTCAAGAAATGCTTACAAAACTATCTGTGCAACAGCTATTTGTATTCAAACTGGCATGCGAGGGATGGCTGCTAGAAATGACCTTAGATTCAGGAAAAGGACGCAAGCTTCAATTGTTATTCAGGGTCGCTACAGAGGTTATTCAGCTCGTACTTACTATAAGAAGCTAAAGAAAGCTACAATTGCTACACAGTGTTCCTGGAGGAGAACATTGGCACGTAGAGAACTTAGAAAGCTTAAAATGGCTGCCAGGGAAGCCAAGGCACTTGAAGCTGCCAAACTTAATTTGGAAAAGCAAGTTGAAGAATTAACTTTGAGTCTAGAAACAGAGCAGAGAATGAGGGAAGCCAAGACACAGGAAAATGAAAAACTACAGCATGCTTTGCAAGATAAGGAGCTTCAGTTCCAAGAAACCAACGCAGCCAAGACACAGGAAAATGAAAAACTACAGCATGCTTTGCAAGAGATGGAGCTCCAGTTACAAGAAACCAAGGAAGCCAAGACACAGGAAAATGAAAAACTACAGCATGCTTTGCAAGAGATGGAGCTTCAGTTACAAGAAACTAAAGCAGCACTCATTCAGGAACGAGACACTGCCAAGAAAGTAGCTGAGGAAACACCAACTATACAGGAGAATTCTGTTAATGTTGTTGACAATGAATTGATCAATAAGCTTACTGCAGAAAATGAACAACTCCAGAATGCTTTGCAAGAGATGGAGCTTCAGTTACAAGAAACTAAAGCAGCACTCATTCAGGAACGAGACACTGCCAAGAAAGTAGCTGAGGAAACACCAACTATACAGGAGAATTCTGTTAATGTTGTTGACAATGAATTGATCAATAAGCTTACTGCAGAAAATGAACAACTCAAGAAACTGATTAATTCATTGCGAAAGAAAACTGCACAGGAAATCCCTGTTAATGTTACTGACAATGAGTTGATCAATAAACTTACTTCAGAAAATGAACATCTCAAGGAACGGATTAGTTCATTGGAAAAGAAAACTGCACTGGAGATCCCGGCTAATTTTACTGAGAATGAGCTCATCAATAAACTTACTGCAGAAAATGAACAACTTAAGGAGCAGGTTAATTCATTGGAGAAAAGAATTGATGAAACAGAGAGGAAATATGATGAATGTAGCAAGCTTAGTGAGGAGCGCATGAATCAAATTATAGAGACAGAATCAAAGATGATTGAGATAAAGACAAATATGCAGAGGCTTGAAGAAAAACTATCAGATATGGAAACTGAGAATCAAGTTTTGCGGCAGCAAACCTTGTTGAGTTCATCATCCAGGAAAATGTCAGGGAAGTTTTCGCCTACTACAACTGTGCCCGCGGAAAATGGTACGCAGGCAGCACAGGGTTCTGTTCCTGCAAAAACATTTGGTGTAGAAGATAAAAGGAAATCTATTATGGAGAGGCATCAAGAGAGTATTGAGGCTCTTTTCAAATGTGTGACAAAAGATCTTGGGTTTTGTGAAGGAAAACCTGTGGCAGCATTTACCCTTTACAATTGTCTGCTACATTGGAAATCTTTTGAAGCAGAAAAGACAAGCATATTTGATCGTCTTATTCAACTGATTGGTTCTGAAATAGAGGATCCGAACAACAATGATTGTATGGCTTACTGGCTATCCAACACAGCTTCTTTGTTTTTCCATCTTCAGCGATGTCTAAGAGTACCAACAGCACGGAAACCACCCACTCCAACATCGTTTTTTGGGAGGATGACCCAGGGTTTCCGCTCATCTAATAGTCTTTCCAGCAGTGCCTTTGATGTAGTGCATCAGGTTGATGCCAAGTATCCAGCTTTGCTTTTCAAGCAACAGCTTGCAGCATATGTGGAGAAGATATATGGAATCGTTCGAGAAAATTTTAAGAAAGACTTGTCACCGATGCTTTCTTCTTGCATTCAGGCAGACAGATCATCAGATGACAACAGCCAACAAACTGGTTCCTGGGTCAGCATTATCGAATGCCTTAATAAATATCTCAAGATTTTGAAAGATAACTATGTGCCTCCTGTTCTAGTTCAGAAGCTATTTAATCAAGTTTTTCAGTACATCAATGCTGAAATCTTTAATAGCCTTCTTTTACATCGAGAATGCTGCACATTCAAAAATGGAGAATATTTAAAATCAGGGTTGGGTGAATTAGAGGTTTGGTGCAATGAAGCAACGGAAGAGAGTATTGGCTCAGCTTTGGATGAACTCAAACATGCAAATCAAGCAGTTAGATTCTTGGTTGCACCACAGAAGGATGGGCTATCCTATGACGATCTTACAAATGACCTCTGCCCTGTCCTGAGTGCTCAACAGCTTCATAAAATATGTACACTTTACTGTGACGATGATGACGAAAAACAAAAAATATCACCAGATGTCACTACTAGATTGAAGCTTCTAATGACAGATGATGTAGAAGAAGATGACAAATCTTTCTTGTTGGAGGACAACTCAAGTCTTCCTATTATCGTTGAGGAGATTCCTAGTTCTGCACATGATAAGACCGTTCCAAAAATAAAACCTCCTGCAGAACTTCTTGAGAATGCAAACTTCCAATTTTTACACGATTATTGTTAG 4989 0.4011 MAGQLSFVVGSHVWIEDPEVAWIDAEIQESKQDEITVIYESGSRVVSKSATMYPKDPEFPPNGVEDMTRLAYLHEPGVLRNLHVRYAINEIYTYTGNILIAVNPFQRLPHLSETSTMARYKGAAFGEQSPHPFAIASSAYSKMINEEKSQSILVSGESGAGKTESTKMLMHYLAFLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEDVGKYKLGNPRKFHYLNQSNCIELDGVDDSKEYIATKRAMEVVGISSDEQDAIFRIVAAVLHLGNIEFVKGGEEELDSSQPKDENSHYHLKVAAELLMCDEKSLEASFCKRVMVTRGDTITKSLDPTSAALSRDALAKIVYSRLFDWIVDKINNSIGQDPDSNNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDFFLDKNKDYVVPEHAALLSASKCPFVSGLFPPLPEETTKSTKFSSIATQFKLQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKSFDEFVQRFTILEPKVLKACPDEMTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSASVIQRKVRTFLCRKHFILLKYSATELERVARGQLARHQYECMRREAASLKIQKDFRMYISRNAYKTICATAICIQTGMRGMAARNDLRFRKRTQASIVIQGRYRGYSARTYYKKLKKATIATQCSWRRTLARRELRKLKMAAREAKALEAAKLNLEKQVEELTLSLETEQRMREAKTQENEKLQHALQDKELQFQETNAAKTQENEKLQHALQEMELQLQETKEAKTQENEKLQHALQEMELQLQETKAALIQERDTAKKVAEETPTIQENSVNVVDNELINKLTAENEQLQNALQEMELQLQETKAALIQERDTAKKVAEETPTIQENSVNVVDNELINKLTAENEQLKKLINSLRKKTAQEIPVNVTDNELINKLTSENEHLKERISSLEKKTALEIPANFTENELINKLTAENEQLKEQVNSLEKRIDETERKYDECSKLSEERMNQIIETESKMIEIKTNMQRLEEKLSDMETENQVLRQQTLLSSSSRKMSGKFSPTTTVPAENGTQAAQGSVPAKTFGVEDKRKSIMERHQESIEALFKCVTKDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQLIGSEIEDPNNNDCMAYWLSNTASLFFHLQRCLRVPTARKPPTPTSFFGRMTQGFRSSNSLSSSAFDVVHQVDAKYPALLFKQQLAAYVEKIYGIVRENFKKDLSPMLSSCIQADRSSDDNSQQTGSWVSIIECLNKYLKILKDNYVPPVLVQKLFNQVFQYINAEIFNSLLLHRECCTFKNGEYLKSGLGELEVWCNEATEESIGSALDELKHANQAVRFLVAPQKDGLSYDDLTNDLCPVLSAQQLHKICTLYCDDDDEKQKISPDVTTRLKLLMTDDVEEDDKSFLLEDNSSLPIIVEEIPSSAHDKTVPKIKPPAELLENANFQFLHDYC 1662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00055 1662 Gene3D Kinesin motor domain 65 664 IPR036961 -
Cca06g00055 1662 Coils Coil 1115 1135 - -
Cca06g00055 1662 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Cca06g00055 1662 Gene3D - 441 625 - -
Cca06g00055 1662 Gene3D - 252 310 - -
Cca06g00055 1662 CDD MyosinXI_CBD 1275 1629 IPR037975 GO:0007015
Cca06g00055 1662 Coils Coil 1143 1184 - -
Cca06g00055 1662 Gene3D - 669 732 - -
Cca06g00055 1662 Coils Coil 869 998 - -
Cca06g00055 1662 PANTHER MYOSIN HEAVY CHAIN 5 1659 - -
Cca06g00055 1662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
Cca06g00055 1662 SMART iq_5 832 854 IPR000048 GO:0005515
Cca06g00055 1662 SMART iq_5 807 829 IPR000048 GO:0005515
Cca06g00055 1662 SMART iq_5 736 758 IPR000048 GO:0005515
Cca06g00055 1662 SMART iq_5 784 806 IPR000048 GO:0005515
Cca06g00055 1662 SMART iq_5 759 781 IPR000048 GO:0005515
Cca06g00055 1662 SMART iq_5 855 877 IPR000048 GO:0005515
Cca06g00055 1662 ProSiteProfiles Myosin motor domain profile. 62 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 Pfam IQ calmodulin-binding motif 858 877 IPR000048 GO:0005515
Cca06g00055 1662 Pfam IQ calmodulin-binding motif 787 806 IPR000048 GO:0005515
Cca06g00055 1662 Pfam IQ calmodulin-binding motif 739 757 IPR000048 GO:0005515
Cca06g00055 1662 Pfam IQ calmodulin-binding motif 834 854 IPR000048 GO:0005515
Cca06g00055 1662 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Cca06g00055 1662 Pfam Myosin head (motor domain) 64 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 ProSiteProfiles Dilute domain profile. 1324 1607 IPR002710 -
Cca06g00055 1662 Coils Coil 1080 1103 - -
Cca06g00055 1662 ProSiteProfiles IQ motif profile. 785 811 IPR000048 GO:0005515
Cca06g00055 1662 Pfam Myosin N-terminal SH3-like domain 10 48 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 MobiDBLite consensus disorder prediction 1233 1259 - -
Cca06g00055 1662 Gene3D - 788 834 - -
Cca06g00055 1662 Gene3D - 737 787 - -
Cca06g00055 1662 Gene3D - 835 884 - -
Cca06g00055 1662 Gene3D Myosin VI head, motor domain, U50 subdomain 312 603 - -
Cca06g00055 1662 Coils Coil 1192 1226 - -
Cca06g00055 1662 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Cca06g00055 1662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 788 IPR027417 -
Cca06g00055 1662 SMART DIL_2 1482 1589 IPR002710 -
Cca06g00055 1662 Coils Coil 1018 1056 - -
Cca06g00055 1662 SMART MYSc_2a 56 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 Pfam DIL domain 1483 1585 IPR002710 -
Cca06g00055 1662 PANTHER MYOSIN 5 1659 - -
Cca06g00055 1662 ProSiteProfiles IQ motif profile. 810 837 IPR000048 GO:0005515
Cca06g00055 1662 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca06g00055 1662 CDD MYSc_Myo11 76 722 IPR036018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00055 Cca-Chr6 1187249 1207510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00055 1 1660 Myosins gene family AT1G04600 58.701 0.0 2030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00055 K10357 - gmx:100791031 2682.13