Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00052 ATGAAAGCCCTCACTTCACTACTATTCCTAAATAGAAGCAAAACAAATCACAAGCTCCCACCAGGACCTATTGGTCTTCCCATAGTTGGAAATCTCCACCAACTCGGTGCTAAGCCCCACCAATCCTTGGCCTATCTAGCAAACACTTATGGCCCAATAATGAGTCTCAAATTGGGCCAAATCACCACCATAGTGATGTCCTCAATAGAAATGGCCAAAGAGGTTTTCCTAATGCATGACCAGTTCTTATTAAATAGCAAAATCCCTGATGTAATGAAAGGTGCTAACCATGATGAGTACAACTTGCCCTTCATTCCAGTCTCACATCGTTGGAGAGACTTGGGAAAATTATGTAATGGCCTATTGTTTTCTAATAAGAACTTAGTTGCCAGTGAGGGGCTTAGGTACAACAAGGTTAAGGAGCTTCTCAGTGACATCTACCAAAACAGCTTGAGGGATAAGGTAAGGGAAATCAAGGAACTAATAACAAATATCATGAAAGAGGTTGGAAGGCCAAATTTAGCTGATTGTTTTCCAGTGTTGAAGTTCGTTGACCTTCATGGCATCAGAAGGCGCTCAGGTAAGGGTGTGGAAGAATCAGACATTGGTAAACTCCCTTACTTGCAAGCAATAATGAAAGAGACTTTCAAGTTGCACCCAACAATTCCGCTTTTGCTTCCTAGAAAAGTTGAAGTGAAGTTGGAGATGCATGGCTATACAATCCCAAAGGGTGCACAAGTGTTAGTTAATGTGTGGGCCATTGGCAGGGACCCAGATTTATGGGACAATCCTTGTTTGTTTTCACCAAAGAGGTTCTTGGGGTCAGAAATTGACTATAGAGGAAGGAGTTTTGAGCTCACACCATTTGGTGGTGGGAGGAGAATATGCCCTGGCTTGCCATTGGCCATAAGATTGTTGTTCCAATTAATGTTGGGTTTGCTTATCAATTCCTTTGATTGGGAGCCTCAGGGTGGTGCCAAACCATAG 987 0.4276 MKALTSLLFLNRSKTNHKLPPGPIGLPIVGNLHQLGAKPHQSLAYLANTYGPIMSLKLGQITTIVMSSIEMAKEVFLMHDQFLLNSKIPDVMKGANHDEYNLPFIPVSHRWRDLGKLCNGLLFSNKNLVASEGLRYNKVKELLSDIYQNSLRDKVREIKELITNIMKEVGRPNLADCFPVLKFVDLHGIRRRSGKGVEESDIGKLPYLQAIMKETFKLHPTIPLLLPRKVEVKLEMHGYTIPKGAQVLVNVWAIGRDPDLWDNPCLFSPKRFLGSEIDYRGRSFELTPFGGGRRICPGLPLAIRLLFQLMLGLLINSFDWEPQGGAKP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00052 328 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 3 150 - -
Cca06g00052 328 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 153 195 - -
Cca06g00052 328 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 194 327 - -
Cca06g00052 328 PRINTS E-class P450 group IV signature 296 314 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 PRINTS E-class P450 group IV signature 239 253 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 PRINTS E-class P450 group IV signature 205 221 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 PRINTS E-class P450 group IV signature 255 273 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 PRINTS E-class P450 group IV signature 280 296 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 PANTHER CYTOCHROME P450 FAMILY PROTEIN 3 150 - -
Cca06g00052 328 PANTHER CYTOCHROME P450 FAMILY PROTEIN 153 195 - -
Cca06g00052 328 PANTHER CYTOCHROME P450 FAMILY PROTEIN 194 327 - -
Cca06g00052 328 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 289 298 IPR017972 GO:0005506|GO:0016705
Cca06g00052 328 Gene3D Cytochrome P450 193 328 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 SUPERFAMILY Cytochrome P450 20 326 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 Pfam Cytochrome P450 20 168 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 Pfam Cytochrome P450 193 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g00052 328 Gene3D Cytochrome P450 12 192 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00052 Cca-Chr6 1154842 1157367 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00052 3 324 Cytochrome P450 AT3G26180 37.243 7.02e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00052 - - eus:EUTSA_v10001282mg 287.73