Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00051 ATGGCTGTGAAGACTGGCGCTACAACACTGGGAATTGAGTTTCAAGAAGAAGAGACAGAGCTCATAGGAGAACATCTCGGAGATTCATGTCTTTCATCAAGCTTTCATCAAGatcggtgtggcggtcgcaACAAACACGGCCGCGGCCACGTCAAATTCATTCGATGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCTATCAAGAGGTTTTTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACAATACACTCTTCCCAAACTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCCATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGATTCATCAGGCGCAGGGACAAGGCTATCAAGAGGTTTTTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACAATACACTCTTCCCAAACTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGATTCATCAGGCGCAGGGTAACTTTATACAAAAATTTGAGTGTAAATCATACATAA 672 0.4613 MAVKTGATTLGIEFQEEETELIGEHLGDSCLSSSFHQDRCGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRVTLYKNLSVNHT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00051 223 PANTHER 40S RIBOSOMAL PROTEIN S26 37 141 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca06g00051 223 Pfam Ribosomal protein S26e 39 137 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca06g00051 223 Pfam Ribosomal protein S26e 138 210 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca06g00051 223 PANTHER 40S RIBOSOMAL PROTEIN S26 138 212 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca06g00051 223 Gene3D Ribosomal protein S26e 36 136 IPR038551 -
Cca06g00051 223 Gene3D Ribosomal protein S26e 137 217 IPR038551 -
Cca06g00051 223 ProSitePatterns Ribosomal protein S26e signature. 179 186 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca06g00051 223 ProSitePatterns Ribosomal protein S26e signature. 106 113 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca06g00051 223 PANTHER 40S RIBOSOMAL PROTEIN S26 37 141 - -
Cca06g00051 223 PANTHER 40S RIBOSOMAL PROTEIN S26 138 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00051 Cca-Chr6 1139153 1144681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00051 138 211 Cytoplasmic Ribosomal Protein Gene Family AT3G56340 82.432 2.42e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00051 K02976 - gmx:100781822 203.756