Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00038 ATGGGGGCACCAAAAGTTTCTAGATGTGGAAGAAGAAGGAGAACAATTGCTGGTAAAAGTTCAATTACTCAGCAACCAGCCAGTCATGACTCCAACAAACTGAGCAAATTTGAGTTAGCTGATCTGGAATGGACTAATAGGATTCCAGAGTGTCCAGTGTACCACCCATCAGAGCATGAGTTTGAGCATCCATTGGTTTATCTGCAGAAGATTGCTCCAGAGGCCTCTAAATATGGTACGTGA 243 0.4362 MGAPKVSRCGRRRRTIAGKSSITQQPASHDSNKLSKFELADLEWTNRIPECPVYHPSEHEFEHPLVYLQKIAPEASKYGT 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00038 80 ProSiteProfiles JmjN domain profile. 51 80 IPR003349 -
Cca06g00038 80 Gene3D Cupin 37 80 - -
Cca06g00038 80 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 79 - -
Cca06g00038 80 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 17 79 - -
Cca06g00038 80 MobiDBLite consensus disorder prediction 1 32 - -
Cca06g00038 80 MobiDBLite consensus disorder prediction 17 32 - -
Cca06g00038 80 SMART JmjN_1 50 79 IPR003349 -
Cca06g00038 80 Pfam jmjN domain 52 79 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00038 Cca-Chr6 929932 930274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00038 48 79 JUMONJI Transcription Factor Family AT1G08620 56.250 8.52e-07 42.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca06g00038 JmjN 1.4e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00038 - - vra:106753585 124.405