Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00037 ATGAAGCTCTCCTTCTCCGTCCCCTCCGCGAAAAACCAATCGAAGCCCAAAGCCGTCAACACCTTCGACGACTCTTCCGCCGCCCAAAACGACAACGGCGGAACCAAACACCTCATCACCGAATTCGACCCTTCGAAACCCGCCCCTGCTACCGCCCCCAAAACCCTAATCCCCCCAATCCAAAACGAATGGAGGCCCCACAAAAAGATGAAGAATCTCCACCTCCCCACCACCGACCCTGACTCGGAATCCCTCCAATTCGTGTCCCACACCGCTCAGGATGAATCCGGATCCGACATGTCCTACGGCCTCAACCTCCGCGCCGACAAAAAGCCCCAACAGAACAACCAAGACGCCGCCGCTCCCCTCCGCCGAGTTCCGCCGGAGGTCTCCATGCTGCAGAAGTTCAAGGACGACATGCAGAGGCTGCCAGATGACCCGGGATTAGACGAGTTCAAGGATGTCGCCGTCGAGGGTTTCGGCGCCTCGCTGCTCGCCGGCTACGGCTGGAAGGAGGGGATGGGAATTGGGAGGAACGCGAAGGAGGATGTTAAGGCGGTGCAGATCAAGCGCAGAACCGCTAAGGAAGGTTTAGGGTTTGTTGGTGATGCTCCTGCTGCGCTTGTTCGGAGCAACATTGACAAGGACAGCAAGAACAGGGAAAACAAGAACAAGGAAAAGAATGAGGACAAAGAAAAGAGTGAAAAGGAGAAGGTTGTTAGGATTGTTGGGGGAAGAGATGCCGGGTTGAAGGGTAGTGTTGTTTCTAGCATTGGGGATGGTTATCTTGTTTTGAGGCTTTCCGGGAGTGGACAGAAGGTGAAGGTGAAGGTGGGTGATGTTGCTGAATTGGGTTCTAGGGAGGAAGAGAGGTGCTTGAGGAAATTGAAGGACTCTAAGATTCGGCGCGAGGAGAAGAGACAGGATGTTGGTAGGAGAGAGGAGAGGAGAGTGGTGGATCATAGGAAGGTTTCTTGGCTTACTAGTCACATTCGGGTTAGGGTGATTAGTCGTGATTTGAAAGGGGGGCGGTTGTATTTGAAGAAGGGGGAGGTTCTTGATGTTGTTGGGCCTACGACTTGTGATATATCTATGGATGAGAGCAGGGAGATAGTTCAAGGGGTGTCCCAAGATGTTCTTGAGACGGCAATTCCGAGATGTGGGGGGCCGGTGCTTGTGTTGGCTGGTAAATACAAGGGTGTGTATGGGAGTTTGGTGGAGAGGGATTTGGACAGGGAAAGTGCTGTTGTTAGGGATGCTGATACCCATGAGATGTTCAATGTGAAACTTGAACAGATTGCAGAGTATATAGGGGACCCGAGTTTATTGGGACATTGA 1338 0.5269 MKLSFSVPSAKNQSKPKAVNTFDDSSAAQNDNGGTKHLITEFDPSKPAPATAPKTLIPPIQNEWRPHKKMKNLHLPTTDPDSESLQFVSHTAQDESGSDMSYGLNLRADKKPQQNNQDAAAPLRRVPPEVSMLQKFKDDMQRLPDDPGLDEFKDVAVEGFGASLLAGYGWKEGMGIGRNAKEDVKAVQIKRRTAKEGLGFVGDAPAALVRSNIDKDSKNRENKNKEKNEDKEKSEKEKVVRIVGGRDAGLKGSVVSSIGDGYLVLRLSGSGQKVKVKVGDVAELGSREEERCLRKLKDSKIRREEKRQDVGRREERRVVDHRKVSWLTSHIRVRVISRDLKGGRLYLKKGEVLDVVGPTTCDISMDESREIVQGVSQDVLETAIPRCGGPVLVLAGKYKGVYGSLVERDLDRESAVVRDADTHEMFNVKLEQIAEYIGDPSLLGH 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00037 445 MobiDBLite consensus disorder prediction 1 104 - -
Cca06g00037 445 Coils Coil 215 237 - -
Cca06g00037 445 ProSiteProfiles G-patch domain profile. 157 203 IPR000467 GO:0003676
Cca06g00037 445 MobiDBLite consensus disorder prediction 77 100 - -
Cca06g00037 445 SMART G-patch_5 155 201 IPR000467 GO:0003676
Cca06g00037 445 MobiDBLite consensus disorder prediction 1 36 - -
Cca06g00037 445 MobiDBLite consensus disorder prediction 211 238 - -
Cca06g00037 445 SMART kow_9 384 411 IPR005824 -
Cca06g00037 445 SMART kow_9 233 260 IPR005824 -
Cca06g00037 445 PANTHER G PATCH AND KOW-CONTAINING 1 443 IPR045166 GO:0000398
Cca06g00037 445 Pfam G-patch domain 144 200 IPR026822 -
Cca06g00037 445 Gene3D - 330 384 - -
Cca06g00037 445 MobiDBLite consensus disorder prediction 213 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00037 Cca-Chr6 923516 926444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00037 298 418 C2H2 Transcription Factor Family AT1G55460 31.655 2.27e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00037 K13101 - gmx:100784983 637.106