Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00035 ATGTGGCAAAAACTTGGAGAATGCATGGCTCCTATTGTGGGGCATGATCAGGCCAATAAATGTTGGGAAACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCACCCCCTGCCTCGTCCTCAACAAACTCGACCGCTTGATCACCGAACTCAAACTCACTCCCTCCGAAGCCTACACGCGCCTCTCCCGCATCGTGCACGAGGTCAACGGAATAGTCAGCGCTTACAAATCCGAGAAGTATTTGTCCGACGTCGACTCTCTCCTCGCCGGCGCTTCCACCTCCGGTGAGGCCCTCGAGGATTACGACGACAACGAGGATGTCTTCCAGCCGCAGAAAGGTAACGTTATATTCGCTTGCGCTTTGGACGGTTGGGGCTTTGGGATTCGCGAGTTTGCTGAGATATACGCTTCCAAGCTTGGCGCTAGTGTGAATGCCCTTCAGAGAGCGCTTTGGGGTGCCAAGTTTTATAACCCTAAGACGAAGATGATTGTTGGGAAGAAAGGGGTTGGTGCTAATAAGAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCGTTGTGGCAGGTTTATCAGGGGGCTTTGGATGGGGACAAGGGGTTGGTTGAGAAGGTTGTTAGGTCGTTTAGTTTGTCGGTGCCGCCGCGGGAGCTGCAGAATAAGGATGTGAAGGTCGTGCTTCAGGCGGTTATGAGCCGGTGGCTTCCACTTTCGGATGCGGTTTTGGGGATGGTGGTTAGGTGTTTGCCGGACCCCGTTGTGGCACAGGCGTATCGGATATCGAGGCTGGTTCCGAAGAGGGAGGTTGAGGTTGCTGAGGATGAGAGGGCGGTGGTAGAGGAGGTGGAGATGGTGAGGAAGGCGGTGGAGGGGTGTGAATGTGGGGAGGAGGTTCCTTGTGTTGCTTTTGTGTCGAAGATGTTTGCTGTGCCGGTTAAGATGCTGCCTGGACAAAGGGGGGAGGTTGGCAATGGTTATGGTGATGAGGGAGAGGCTGATTCGGATGAATGTTTTTTGGCGTTTGCTAGAATTTTTAGTGGGGTTTTGTATGCGGGGCAGAGAGTTTTTGTGCTCTCTCCGTTGTATGATCCGTTGAAAGGGGAATCTATGCAGAAGCATATACAGGAGGCTGAGTTGAAATCACTGTATTTGATGATGGGGCAAGGGTTGAAAGTAGTGACATCTGCCAAGGCAGGGAATATTGTTGCCATTGCTGGCCTTGGCCAGCATATATTGAAAAGTGCTACCCTTTCTTCAACTAGGAACTGTTGGCCATTTTCCAGTATGGCATTCCAAGTTGCCCCGACTTTGAGAGTCGCAATTGAGCCGTCTGATCCTGCTGATGTGGGTGCGCTGCTCAAAGGATTGAGACTTCTGAATCGAGCGGATCCATTTGTGGAGGTCACGGTGTCTGCAAGGGGAGAGCACGTTCTCGCTGCTGCCGGAGAAGTTCATCTTGAGAGATGCGTTAAGGATTTAAAGGAGAGGTTTGCAAGGGTAAGCTTGGAGGTCTCTCCGCCTCTTGTTTCATACAAAGAGAGCATTGAGGGAGACGTATCCAATGTGCTGGAAAATTTGAAAGTTCTTAGCAGGAGATCCGATTATGTTGAAAAATCTACACCCAATGGAAGGTGTGTTGTTCGGGTGCAGGTGATGAAACTTCTACCTTCTCTTACAAAGGTGCTCGACGAAAGCTCTGATTTACTTGGTGATGTCATTGGAGTAAAGTCGGGGCAGACAGTAAAAAGTTTGGAAACCCAGAGGCAGAGTATTCTTGAAAACGATAACCCAACTGAAGTACTAAAAAAACGCATATTGGATGCAGTGGAGGGGGATATTTTGAGCAGGAATGAGAATGACAAGGACCATGCTGAGAAATGTAAATTGAAGTGGCAAAAGATTTTGAGGAGGATATGGGCACTTGGACCTAGGCAGATTGGTCCTAACATTCTCTTTACTCCTGATATTAAAGCAGAAAGTACTGATAATTCTGTCTTAATACGAGGTTGTCCTCGGGTATCAGAAAGGTTCGGCTTTGTGGCTGATTCTAGTGTCAGTGACTCGGTTGCTGAGACATCTTCAAATGCAAACCAAGCTTCGATCACAGATGCTGAGCACCTTGAGAGTAGTGTTATATCTGGCTTCCAATTGGCCACTTCAGCTGGACCCTTGTGTGATGAACCTATGTGGGGTTTGGCATTTGTCATTGAGGCACGCATAACACCATTTTCAGGGCAGCATGACGAATCTGAAACACACCAACAATCTGAGCAGTATGGCCTATTTGCAGGGCAAGTAATTGCAACTGTCAAAGATGCTTGTAGAGCAGCAGTGCTTCAGAATAAGCCACGGCTTGTAGAAGCAATGTACTTCTGTGAATTGAATACACCTACTGAATATTTGGGTCCCATGTATGCTGTACTTTCTCGAAGACGGGCCCGAGTTCTGAAGGAAGAGATGCAAGAAGGTTCACCTTTCTTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGTTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACTTCTGGTGCTGCAAGTGCACTTCTTGTACTTAGCCACTGGGAAGCACTTCCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAGATTGAAGAGTTTGGAGATGGTTCCAGTGTTCTTCCAAATACGGCAAGAAAATTAATTAACGCAGTCAGACGGCATAAGGGCCTTCCTGTGGAGGAAAAGGTAGTACAGCATGGAACCAAGCAGAGGACACTGGCTCGTAAAGTCTGA 2781 0.4862 MWQKLGECMAPIVGHDQANKCWETHAVLRQCWIERLTPCLVLNKLDRLITELKLTPSEAYTRLSRIVHEVNGIVSAYKSEKYLSDVDSLLAGASTSGEALEDYDDNEDVFQPQKGNVIFACALDGWGFGIREFAEIYASKLGASVNALQRALWGAKFYNPKTKMIVGKKGVGANKKPMFVQFVLEPLWQVYQGALDGDKGLVEKVVRSFSLSVPPRELQNKDVKVVLQAVMSRWLPLSDAVLGMVVRCLPDPVVAQAYRISRLVPKREVEVAEDERAVVEEVEMVRKAVEGCECGEEVPCVAFVSKMFAVPVKMLPGQRGEVGNGYGDEGEADSDECFLAFARIFSGVLYAGQRVFVLSPLYDPLKGESMQKHIQEAELKSLYLMMGQGLKVVTSAKAGNIVAIAGLGQHILKSATLSSTRNCWPFSSMAFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCVKDLKERFARVSLEVSPPLVSYKESIEGDVSNVLENLKVLSRRSDYVEKSTPNGRCVVRVQVMKLLPSLTKVLDESSDLLGDVIGVKSGQTVKSLETQRQSILENDNPTEVLKKRILDAVEGDILSRNENDKDHAEKCKLKWQKILRRIWALGPRQIGPNILFTPDIKAESTDNSVLIRGCPRVSERFGFVADSSVSDSVAETSSNANQASITDAEHLESSVISGFQLATSAGPLCDEPMWGLAFVIEARITPFSGQHDESETHQQSEQYGLFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLINAVRRHKGLPVEEKVVQHGTKQRTLARKV 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00035 926 Gene3D Translation factors 252 432 - -
Cca06g00035 926 Gene3D - 783 917 - -
Cca06g00035 926 Pfam Elongation factor Tu GTP binding domain 19 141 IPR000795 GO:0003924|GO:0005525
Cca06g00035 926 CDD EF2_II 299 420 - -
Cca06g00035 926 SMART EFG_C_a 784 873 IPR000640 -
Cca06g00035 926 SUPERFAMILY EF-G C-terminal domain-like 433 507 IPR035647 -
Cca06g00035 926 Gene3D - 530 781 IPR014721 -
Cca06g00035 926 SUPERFAMILY EF-G C-terminal domain-like 787 885 IPR035647 -
Cca06g00035 926 Pfam Elongation factor G C-terminus 785 869 IPR000640 -
Cca06g00035 926 Gene3D Elongation Factor G (Translational Gtpase), domain 3 434 510 - -
Cca06g00035 926 SUPERFAMILY Ribosomal protein S5 domain 2-like 509 786 IPR020568 -
Cca06g00035 926 CDD aeEF2_snRNP_like_IV 506 791 - -
Cca06g00035 926 PANTHER - 45 925 - -
Cca06g00035 926 CDD EF2_snRNP_III 435 506 - -
Cca06g00035 926 Gene3D Yeast translation eEF2 (G' domain) 130 235 - -
Cca06g00035 926 Pfam Elongation factor Tu domain 2 339 417 IPR004161 GO:0005525
Cca06g00035 926 CDD eEF2_snRNP_like_C 787 866 - -
Cca06g00035 926 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 45 925 - -
Cca06g00035 926 SUPERFAMILY Translation proteins 290 429 IPR009000 -
Cca06g00035 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 250 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00035 Cca-Chr6 909698 913589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00035 23 926 Eukaryotic Initiation Factors Gene Family AT3G22980 69.323 0.0 1265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00035 K14536 - pvu:PHAVU_003G003900g 1608.19