Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00034 ATGACACTAGCTAGAGGCCCTACCCTTTGGATAATATTACTGAAATGCCCTTCCTGCATGCAAATTGGCCTCAGGCTCAGCTACCGCGTTTATCACCAACGCAAAATGACGTTACTACCCTCTCTACTTTTTCATGCCAAATACAAGAATTCATCTCTGATTCTACAAGGAAAGAAAGTTAATATCCGAGAGGGATCAAGGGAAATTGTGGTAGGGTTTatcggacttatcatcttctccagcACTGGGAAGATGTGGGATTGGTGCACTGAACCCTTCAGGATGGAGCAGATCATAGAGAAGTACCAGAGATCAACAGGAGCTCGCATACCTGAACGTGATCATCCCCGAGAAGAACTATTCCATGACATGGCAATGCTGAGGCAGGAAACTCTCCGTCTTGAATTAGGAATTCAACGTTATCTTGGAGAGGACATGGGGTGTTTACAATATGAAGACTTGTCTAAGCTTGAACAAGAATTGGAGAACTCTGTGGCAAAAGTTAGAAACCGTCAGAATGAGCTCTTGCAACAGCAAATGGAGAATCTGCGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAACAATTTGTCCAATTGGATTCATGATGAGGAGCAGCGGGCAGTGTTGGAGTTTCAAAAGGCTACAGTGGAAGCAAGCAAACCAGTGCATCATCCTTCAACTTGCTTCCCCTGTGCTTCCACACCTTCAGTACCCTTATCTTCAACTCGCACAGCCCAATATTCAAGACTCAGTACCATAACATTAATCAATGTGTGTATACATACTCTAATGTGGATAGTATCTATCGGATTGTGA 819 0.4237 MTLARGPTLWIILLKCPSCMQIGLRLSYRVYHQRKMTLLPSLLFHAKYKNSSLILQGKKVNIREGSREIVVGFIGLIIFSSTGKMWDWCTEPFRMEQIIEKYQRSTGARIPERDHPREELFHDMAMLRQETLRLELGIQRYLGEDMGCLQYEDLSKLEQELENSVAKVRNRQNELLQQQMENLRRKERILEEENNNLSNWIHDEEQRAVLEFQKATVEASKPVHHPSTCFPCASTPSVPLSSTRTAQYSRLSTITLINVCIHTLMWIVSIGL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00034 272 Pfam K-box region 116 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g00034 272 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 73 226 - -
Cca06g00034 272 ProSiteProfiles K-box domain profile. 117 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g00034 272 PANTHER SERUM RESPONSE FACTOR HOMOLOG 73 226 - -
Cca06g00034 272 Coils Coil 151 203 - -
Cca06g00034 272 SUPERFAMILY SRF-like 74 120 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00034 Cca-Chr6 878604 882981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00034 58 222 MADS-box Gene Family AT5G23260 44.048 2.91e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00034 - - gmx:102667157 223.016