Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00032 ATGACATTGGTGAAGTTCCATGAACTTTGGAAGCCAGTTTTGGTGATGATTATAGTTAATTTAGCTCTGGCTTTTGTGAATATATTTCTGAAGAAGGTTCTTAATGAAGGACTGGATTACTTGACCATCTTAACATATAGACAGGCAATTTCAGCCATTTTCTTGGCACCTATTGCTTGCTTCTATGAAAGGAAAAGGAAGTTGGAGGGTCACATAATATGTCTGCTCTTCCTAAGTGCTCTTGTCGGGGTGACACTCACTCAATATCTCTATCTTATTGGACTTGAATATACATCTGCTACATTCTCATGCGCATTCCTTAACACGGTACCTGTATTCACGTTCATCTTGGCACTGCCACTGGGGATAGAGAAGGTGAACATTAAAAGCTTGAGTTCCAAGGCCAAAGTGTTGGGAACTTTTGTGTGTATTGGAGGAGCTTTGTTGTTGATCCTTTATAAAGGAATGCCCTTAATCAACAGACAACAAGAGCACATAGCAGACAAAGGCACAGCAACACCATCAGCATCCAAGTTAAAGAAATGGATCATAGGTTCACTGCTTCTAACTGCAGGATGCCTCTTGTGGTCTTCATGGTTTCTTATACAAGCAAGGATCAGCAAAAAGTATCCATGCCAATACTCTAGCACAGCCATTTTGTCCTTTTTTGCTGCCATTCAATCAGCAATATTAACTTTGCTCATAGACAGAAATAATGCCAAATGGATTCTCAAAGGGAAGTTAGAGATATTGACTGTTGTATATTCTGGGCTGGTTGGATCAGGCCTATGCTATGTGGCAATGTCATGGTGTGTCAAACAAAGGGGTCCAGTTTTTACTTCAGCATTTACCCCTCTTCTACAGGTGTTTGTGGCCGTGCTTGATTTCTCTATATTACATGAGGAGATTTACCTGGGAAGTGTTGCAGGATCAGTCTTGGTTATTTCTGGCACGTATATTCTACTTTGGGGTAAAAGTAAAGAGGAAGAAAAATGTGCTGGGAAGGATGCTCAAGAAAATCATGAAGATGAAGAATGCATGAACAATTTGGAAGCAAGTCCAAATGTTCCTTCTAAGCTAAGGCCTAATGGGGAACAAGGATTCACTGAGTTACAAGTGAAGCAGTTAGGTATTACAGTAACTAGAAGTTGA 1152 0.4028 MTLVKFHELWKPVLVMIIVNLALAFVNIFLKKVLNEGLDYLTILTYRQAISAIFLAPIACFYERKRKLEGHIICLLFLSALVGVTLTQYLYLIGLEYTSATFSCAFLNTVPVFTFILALPLGIEKVNIKSLSSKAKVLGTFVCIGGALLLILYKGMPLINRQQEHIADKGTATPSASKLKKWIIGSLLLTAGCLLWSSWFLIQARISKKYPCQYSSTAILSFFAAIQSAILTLLIDRNNAKWILKGKLEILTVVYSGLVGSGLCYVAMSWCVKQRGPVFTSAFTPLLQVFVAVLDFSILHEEIYLGSVAGSVLVISGTYILLWGKSKEEEKCAGKDAQENHEDEECMNNLEASPNVPSKLRPNGEQGFTELQVKQLGITVTRS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00032 383 Pfam EamA-like transporter family 184 322 IPR000620 GO:0016020|GO:0016021
Cca06g00032 383 Pfam EamA-like transporter family 11 151 IPR000620 GO:0016020|GO:0016021
Cca06g00032 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 327 - -
Cca06g00032 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 154 - -
Cca06g00032 383 MobiDBLite consensus disorder prediction 333 348 - -
Cca06g00032 383 PANTHER WAT1-RELATED PROTEIN 10 348 IPR030184 GO:0016021|GO:0022857
Cca06g00032 383 MobiDBLite consensus disorder prediction 333 368 - -
Cca06g00032 383 PANTHER WAT1-RELATED PROTEIN 10 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00032 Cca-Chr6 834763 837414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00032 1 330 Nodulin-like Gene Family AT1G11460 42.388 5.34e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00032 - - gmx:100794199 690.649