Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00028 ATGGATAAAACTCCACGCATGCTTCAAATGGTTTCCACCTTGGTCCTCATTCTAAGTGTTTCATCATTGGCCTCAGCATCTCTAGAAGTGGGTTTCTACAGCTCCACATGTCCATCTGCTGAGACAATAGTGAGAAACACAGTCAACAAAGCCATTTCTGACAACCCAGGCGTAGCTGCTGGTCTCATTAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGTGATGGTTCAGTGTTGCTAGCATCTACATCGGGTAACCCAACAGCTGAGAGAGACAACTTCGTTAACAACCCAAGCCTACGTGGCTTCGAGGTGATTGAGGAAGCGAAGACCGAAGTAGAGGCTGCATGTCCTCAAACGGTGTCGTGTGCAGACATACTGGCCTTCGCGGCACGAGACAGTGTTGTGAAAGTTGGTGGCACAAACTACGAGGTCCCATCGGGACGCAGAGACGGTCGTGTCTCAATCGGCGACGAAGTGCCACAAAATGTGCCGAGACCAACCTTGAGCGCCGACGAACTCGTCACGAATTTCGCACGAAAGGGTTTGTCGGCAGATGAAATGGTGACACTTTCAGGAGCGCATTCAATTGGCGTGTCGCACTGCTCTTCCTTCTCAAACCGCTTGTACTCTTTCAACGACACGTTCCAGCAAGACCCTTCCATGGATGCTTCTTATGCTGCGACGTTGAAAGCCACGTGTCCTGCTCCACCCTCCGCAACGGACCCGACGGTGGCTCTTGACCCTTCCACGCCGATTCGGTTGGACAACAAATACTATGAGGGGTTGATGAACCACCGTGGCTTGTTGACGTCGGATCAAACGTTGTACACCAGCCACTCCACCAAGGAAATGGTTCAAACCAATGCTTACAATGGTGCAACTTGGGCTCAGAAGTTTGCTCAAGCGATGGTGCGCATGGGTTCCATTGAAGTGCTTACTGGCTCAGATGGTGAGATCAGGAAGCATTGCAGCTTTGttaattaa 990 0.5051 MDKTPRMLQMVSTLVLILSVSSLASASLEVGFYSSTCPSAETIVRNTVNKAISDNPGVAAGLIRMHFHDCFVRGCDGSVLLASTSGNPTAERDNFVNNPSLRGFEVIEEAKTEVEAACPQTVSCADILAFAARDSVVKVGGTNYEVPSGRRDGRVSIGDEVPQNVPRPTLSADELVTNFARKGLSADEMVTLSGAHSIGVSHCSSFSNRLYSFNDTFQQDPSMDASYAATLKATCPAPPSATDPTVALDPSTPIRLDNKYYEGLMNHRGLLTSDQTLYTSHSTKEMVQTNAYNGATWAQKFAQAMVRMGSIEVLTGSDGEIRKHCSFVN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00028 329 Gene3D Peroxidase, domain 2 166 308 - -
Cca06g00028 329 CDD secretory_peroxidase 30 328 IPR033905 GO:0004601|GO:0042744
Cca06g00028 329 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cca06g00028 329 PANTHER PEROXIDASE 19 327 - -
Cca06g00028 329 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 SUPERFAMILY Heme-dependent peroxidases 28 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 PANTHER PEROXIDASE 25-RELATED 19 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 Pfam Peroxidase 44 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Cca06g00028 329 ProSiteProfiles Plant heme peroxidase family profile. 27 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca06g00028 329 Gene3D - 31 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00028 Cca-Chr6 743030 744265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00028 14 329 Peroxidase AT4G11290 45.679 6.67e-97 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00028 K00430 - gmx:100786791 543.117