Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00024 ATGTCTGTGACATCCAAGCTCCTTCCTGCTCTCCACTCTATCAAATCGTTGCCTCCTGAGTTCAAGCTTACTTCTGATCTAATGGATGACAGTGGAGAAGCGAAATCGAGAAGCGATGATGTGATTGGATCAGGTAGTCCAGAAAATGAAGTTCTGAATGGGGAGGTTTCTGAGGAGGCTCAGAACCGTGCTGGTGACATGGGTCTTTACGATGAGGACTTGGCATATAGCAGAAAAGGTGTATCCTTGGAAGACAGGTCATCAATTGCTGATGAAGACTTAGAATCTGTTCCTTTGCCCTTCCCATCAACTTCCATGTCCTCTAGGGAACGCAGGTGGAGTGATACAACACCTTATGCTACAAAAAAGAAGCTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGGGAAGATAATAAAAACTTCTGGAAATGAATCCATCATTTCACTCCCGGACGGGAAGGTTTTGAAAGTGAAAGAGGAAAGTTTAGTACCAGCAAATCCTGATATCCTTGATGGGGTGGATGACCTCATGCAACTTAGTTATTTAAACGAACCGTCAGTTTTGTACAACCTGCAATATAGATACAACCAAAACATGATTTATACAAAAGCAGGGCCTGTTTTAGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTATATGGTAATGATTATATTGAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCAATAACAGACACAGCCATCCGAGAAATGATACGAGGTAACTTTTTATTTCCTTATATTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACCGGAAAAATCTCTGGTGCAAATATTCAAACATGTAAAGTAGTTCAATGCAATGAAGGGGAAAGATCGTATCATATATTTTATCAGCTATGTGCTGGTGCACCTCCATCTCTCAGGGGGAAGCTAAACCTACAAAATGCAGAAGACTATAAATATCTGAGGCAGAGCAATTGCTATTCAATTACTGGTGTTAACGATGCAGAAGAATTTCGCACAGTCATGGAAGCTCTTGATGTTGTCCACATTAGTAAAGAAGACCAGGAGAACGTATTTGCTATGCTTGCTGCAGTACTATGGTTAGGAAACATATCATTTGATGTGATTGATAATGAAAATCATGTTCAAGCCGTAGAAGATGAGGGTCTGTTCCATGTAGCCAAGTTAATTGGCTGTGACATTGAAGATCTCAAGTTGACTCTATCAACTCGCAAAATGAAAGTCGGTAATGATAATATAGTCCAGAAGTTGACACTATCACAGGGAATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGTCTGTTTGATTGGTTGGTCGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACTGGCAGATCAATCAGTATTCTAGATATCTATGGATTTGAATCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGTTTATTATCCCTGTTAGATGAAGAGTCCACTTTCCCAAACGGCACAGATTTAACATTTGCTAACAAGCTTAAACAGCATTTGAATTTAAATCCGTGTTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTACACCATTATGCCGGGCAGGTAACCTATGATACAACTGGATTTCTGGAGAAGAACAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCTTGCTCATGTCCTCTTCCTCAGATATTTGCATCTCATATGCTCACTCAGTCTGATAAACTGGTAGTTGGTCCCTTGCACAAGTCAGGCGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGCCAATTGTTCCAACTGATGCAACGATTAGAGAGCACTACACCACATTTTATTCGCTGCGTTAAACCCAATAATCTTCAATCACCTGAATCATATGAGCAAGGGCTTGTATTGCAACAGCTGAGATGCTGTGGGGTTCTGGAAGTAGTTAGAATATCGAGATCAGGCTTTCCAACAAGAATGACTCATCAAAAGTTTGCCAGAAGATATGGCTTTCTCCTCCTTGATAATGTTGCATCTCAGGATCCACTTAGTGTTTCAGTTGCAATTCTTCATCAGTTTAATATTTTGCCCGAGATGTATCAAGTTGGCTACACAAAACTATTTTTCCGAACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCACGGCATTTTACGTGTCCAAAGTTGTTTCAGGGGTTACCAAGCTCGTCGATCTCTGAAGGAGCTTCAAGGAGGCATCACTGCTTTGCAGTCATTTATTAGGGGAGACAAAACCAGAAAGGCATATTCAGCTTTACTTAAGAGGCATAGAGCTGCTGTTATTATACAGAAGCGGATGAAAGCAGTATTTGCAAGAAACAGAATGAGGACTATTAGTGACGCTGCAATAGTCATACAAGCAGTTATTCGCGGTTGGTTGGTCAGAAGATGCTCTGGAGATTTTGGATTTTTGAAATCTGGAGACACGAAGATGAAAGAGTCAGATGAGGTTCTGGTTAAGTCATCTTTCCTGGCTGAATTACAGCGACGGGTACTCAGGGCAGAAGCTGCCCTTAGAGAGAAAGAAGAGGAAAATGACATCCTTCATCAACGTCTCCAACAATATGAGAGCAGATGGTCTGAGTATGAATTGAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATTGATGATTCTGAAAGAAATTCAGATGCATCTGTTAATGCAAGTGATGAGCGGGATCATAGCTGGGATGTTAGTGGTAATCACAAGCGCCAAGAAAGCAATGGGCCAAGATCAACAAGTGCTGGTTTAAGTGTTATAAGTCGGCTGGCCGAAGAATTCGAGCATAGGAGTCAAGTATTTGGTGATGATGCCAAGTTTTTGGTTGAGGTAAAATCTGGTCAGGCAGAAGCAAGTTTGAACCCAGATCAAGAGCTTAGAAGGTTAAAACAAATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTGCGGGAAACAAAGGTCATTTTAAATAAACTTGGAAGTGAAGATGGCGCACTTGAGAAAATGAAGAAAAAGTGGTGGGGAAGACGGAACAGTACAAGGATAAATTGA 3498 0.4088 MSVTSKLLPALHSIKSLPPEFKLTSDLMDDSGEAKSRSDDVIGSGSPENEVLNGEVSEEAQNRAGDMGLYDEDLAYSRKGVSLEDRSSIADEDLESVPLPFPSTSMSSRERRWSDTTPYATKKKLQSWFQLPNGNWELGKIIKTSGNESIISLPDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKRKAIESPHVYAITDTAIREMIRGNFLFPYIGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKVVQCNEGERSYHIFYQLCAGAPPSLRGKLNLQNAEDYKYLRQSNCYSITGVNDAEEFRTVMEALDVVHISKEDQENVFAMLAAVLWLGNISFDVIDNENHVQAVEDEGLFHVAKLIGCDIEDLKLTLSTRKMKVGNDNIVQKLTLSQGIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNLNPCFKGERDQAFTVHHYAGQVTYDTTGFLEKNRDLLHLDSIQLLSSCSCPLPQIFASHMLTQSDKLVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCVKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMTHQKFARRYGFLLLDNVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARRSLKELQGGITALQSFIRGDKTRKAYSALLKRHRAAVIIQKRMKAVFARNRMRTISDAAIVIQAVIRGWLVRRCSGDFGFLKSGDTKMKESDEVLVKSSFLAELQRRVLRAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDHSWDVSGNHKRQESNGPRSTSAGLSVISRLAEEFEHRSQVFGDDAKFLVEVKSGQAEASLNPDQELRRLKQMFEAWKKDYGARLRETKVILNKLGSEDGALEKMKKKWWGRRNSTRIN 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00024 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 888 IPR027417 -
Cca06g00024 1165 ProSiteProfiles IQ motif profile. 844 871 IPR000048 GO:0005515
Cca06g00024 1165 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1165 - -
Cca06g00024 1165 PRINTS Myosin heavy chain signature 205 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 PRINTS Myosin heavy chain signature 526 554 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 PRINTS Myosin heavy chain signature 257 282 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 PRINTS Myosin heavy chain signature 299 326 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 PRINTS Myosin heavy chain signature 579 607 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 CDD MYSc_Myo8 189 828 IPR036022 -
Cca06g00024 1165 Gene3D - 536 730 - -
Cca06g00024 1165 Gene3D Myosin VI head, motor domain, U50 subdomain 411 708 - -
Cca06g00024 1165 ProSiteProfiles IQ motif profile. 914 943 IPR000048 GO:0005515
Cca06g00024 1165 MobiDBLite consensus disorder prediction 1031 1055 - -
Cca06g00024 1165 Coils Coil 960 1008 - -
Cca06g00024 1165 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 122 171 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 MobiDBLite consensus disorder prediction 1031 1069 - -
Cca06g00024 1165 SMART iq_5 864 886 IPR000048 GO:0005515
Cca06g00024 1165 SMART iq_5 913 935 IPR000048 GO:0005515
Cca06g00024 1165 SMART iq_5 890 912 IPR000048 GO:0005515
Cca06g00024 1165 SMART iq_5 841 863 IPR000048 GO:0005515
Cca06g00024 1165 Pfam IQ calmodulin-binding motif 916 932 IPR000048 GO:0005515
Cca06g00024 1165 Pfam IQ calmodulin-binding motif 846 863 IPR000048 GO:0005515
Cca06g00024 1165 Gene3D - 773 841 - -
Cca06g00024 1165 MobiDBLite consensus disorder prediction 24 68 - -
Cca06g00024 1165 Gene3D Kinesin motor domain 178 769 IPR036961 -
Cca06g00024 1165 ProSiteProfiles IQ motif profile. 865 894 IPR000048 GO:0005515
Cca06g00024 1165 Gene3D - 350 409 - -
Cca06g00024 1165 SMART MYSc_2a 169 841 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 Gene3D - 893 935 - -
Cca06g00024 1165 Gene3D - 844 892 - -
Cca06g00024 1165 Pfam Myosin head (motor domain) 177 828 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 ProSiteProfiles Myosin motor domain profile. 175 840 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca06g00024 1165 PANTHER MYOSIN 9 1165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00024 Cca-Chr6 673803 694528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00024 3 1163 Myosins gene family AT1G50360 73.761 0.0 1747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00024 - K10357 gmx:100781736 2134.38