Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00019 ATGGCGGGAGTGAGAGAGCAAGACCACTACATGCCGATAGCGAACGTGATAAGGATCATGCGGAGGATTCTGCCGGCTCATGCTAAGATCTCAGACGACGCGAAGGAGATGATCCAGGAGTGCGTGTCGGAGTACATCAGCTTCATCACGGCGGAGGCGAACGAGCGGTGCCAGCAGGAGCAGCGGAAGACGGTGACCGCGGACGACGTGCTGTGGGCGATGGAGAAGCTCGGCTTCGACGACTACGCTCGCCCTCTCGCCGTCTACCTCCAGCGCTACCGCGAGAGCGAAGGAGAACCCGCTTCTGTGAGACGCgcttctgcatctgcatctgcatctgcacctccaCCACCTGTTCTTCGCGTTCCCCCTAGCGTGGTGGTTCCAGGTGactcacactctcactcacacccacacccgcatccaccttaccctcaTGGATTTTCCCTGTCTGAGTTCGACCCTTCGCCTCAAGGCTTCTTTGGGAACGATGCTTCACCCTCTGCTGATGTTGCTGCCAATTTTCTTCCCGGCTTTGATCCCTATGCTCACATGAACATCCGACGTGATTCCATGTGA 579 0.5009 MAGVREQDHYMPIANVIRIMRRILPAHAKISDDAKEMIQECVSEYISFITAEANERCQQEQRKTVTADDVLWAMEKLGFDDYARPLAVYLQRYRESEGEPASVRRASASASASAPPPPVLRVPPSVVVPGDSHSHSHPHPHPPYPHGFSLSEFDPSPQGFFGNDASPSADVAANFLPGFDPYAHMNIRRDSM 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00019 192 MobiDBLite consensus disorder prediction 99 149 - -
Cca06g00019 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Cca06g00019 192 SUPERFAMILY Histone-fold 7 114 IPR009072 GO:0046982
Cca06g00019 192 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Cca06g00019 192 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Cca06g00019 192 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Cca06g00019 192 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 110 - -
Cca06g00019 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 110 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca06g00019 192 Gene3D Histone, subunit A 2 116 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00019 Cca-Chr6 531345 532729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00019 4 158 CCAAT-HAP3 Transcription Factor Family AT5G47670 59.146 1.42e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca06g00019 CBFD_NFYB_HMF 4e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00019 K08065 - gmx:100811633 216.853