Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00016 ATGTTTCCGAGTGAGAATCATAGTAACGGCTATCAGCATCTCTCAGCGGGTATGGGTATGGGAATGGGTCACTCTCACAGAGAGCGAGTCCGTCGCGGCACACGCAGGTCACGTGCTTCCCCCTCCGCGCACACCCTTAGGGTTTGCGACAACCAACCGCAACCGCAACCGCAACAACAACACCATCCACCTCCTTGCACAGACTTCGATGTCGCATATTTCCATTCCTATTCTCACCTTGGTATCCACCAGGAAATGATCAAGGATCGCGTGCGCACTGAAGCTTATAGGGACGCAATCATGCAGCACCAGAGCTTTATCGCAGGCAAGGTTGTGGTTGATGTTGGATGTGGTACAGGAATCCTTTCTATATTTTGTGCCCAGGCTGGTGCAAAGCGGGTGTATGCAATTGATGCCAGTGACATTGCCCTACAGGCGACTGAAGTTGTGAAAGCAAATAACTTATCTGATGTTGTTATTGTATTGCATGGACGAGTCGAGGATGTTGAAATCGATGAAGAGGTGGATGTTATAATTTCAGAATGGATGGGCTATATGCTTCTATATGAGAGCATGCTTGGAAGTGTTATTACTGCTAGAGATCGTTGGCTCAAACCTGGTGGACTTATTCTTCCTTCTAGTGCAACGTTGTACATGGCTCCTGTTACACATTCAGACAGATACAGTGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTGATATGTCTGCCATGGTGTCATTAGCTAAACAATGTGCATTTGAAGAACCTTCCGTGGAGACAATAACCGGTGAAAATGTTTTGACATGGCCACATGTGGTAAAATTTATTGATAGTTATTCTGTTACCATTCGAGAGTTAGAGTCTGTGACAGCCAACTTTAAGTTCAATTCTATGATGCGAGCACCACTACATGGTTTTGCATTTTGGTTTGATGTTGAATTTAATGGACATGCAATATCATCGACCAATTATCATTCGACAACTTCATTTATTGACAATCATCAGATGAATGGTGGTCAGAGAAAAAAAAAGTCAAACTCAAATGAAGCACTGGTCTTGTCCACTGCACCTGAGGAGCCTCCAACACATTGGCAACAGACATTGATATACTTCTATGATCCTATAGATCTGGAACAAGATCAAGTTATTGAAGGTTTAGTGAGATTGTCACAAAGCAAAGAAAATGCTCGATTTATGAACATTCACCTTGAATATACTACAGGTGGTCGATCGTTTGTGAAAGAGTCTGTAATGAGATGA 1266 0.4329 MFPSENHSNGYQHLSAGMGMGMGHSHRERVRRGTRRSRASPSAHTLRVCDNQPQPQPQQQHHPPPCTDFDVAYFHSYSHLGIHQEMIKDRVRTEAYRDAIMQHQSFIAGKVVVDVGCGTGILSIFCAQAGAKRVYAIDASDIALQATEVVKANNLSDVVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSSATLYMAPVTHSDRYSDSVDFWRNVYGIDMSAMVSLAKQCAFEEPSVETITGENVLTWPHVVKFIDSYSVTIRELESVTANFKFNSMMRAPLHGFAFWFDVEFNGHAISSTNYHSTTSFIDNHQMNGGQRKKKSNSNEALVLSTAPEEPPTHWQQTLIYFYDPIDLEQDQVIEGLVRLSQSKENARFMNIHLEYTTGGRSFVKESVMR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00016 421 Gene3D Vaccinia Virus protein VP39 67 212 IPR029063 -
Cca06g00016 421 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 70 404 IPR025799 GO:0016274|GO:0018216
Cca06g00016 421 CDD AdoMet_MTases 112 211 - -
Cca06g00016 421 Gene3D - 214 419 - -
Cca06g00016 421 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 76 411 IPR029063 -
Cca06g00016 421 PANTHER BNAC03G41340D PROTEIN 23 418 - -
Cca06g00016 421 MobiDBLite consensus disorder prediction 1 65 - -
Cca06g00016 421 Pfam Ribosomal protein L11 methyltransferase (PrmA) 108 182 - -
Cca06g00016 421 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 23 418 IPR025799 GO:0016274|GO:0018216
Cca06g00016 421 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00016 Cca-Chr6 457946 470842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00016 73 387 C2H2 Transcription Factor Family AT3G12270 40.606 3.47e-67 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00016 K11437 - gmx:100809174 716.072