Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02161 ATGGGCAACACATGCCGCGGATCTTTGAAAGGGAAATATATTCAGGGCTTCAGCCAGCCCGAAGACCACTCCAAGCGCACAACCCATTCTGATCGCTCCGACTCAACTAAGCAAATTCCCAATTCCGCAGAAAACAAAAATCTACCCTTGAACGCCCGGAAAGAAGCCATCATGCGCCGAGGCCTCGACAACCAAGCATACTATGTCTTGGGCCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGCAAATTGGGCCAGGGACAATTCGGCACCACTTATTTATGCACCGAGAATTCCACCTCCAATGAATATGCTTGCAAATCCATCTCCAAACGGAAGTTGATTTCCAAGGAGGACGTCGAGGACGTTAGGAGGGAAATTCAGATTATGCATCATTTAGCTGGTCACAAGAACATTGTCACCATCAAGGGTGCTTATGAGGACCCTCTCTATGTCCATATTGTCATGGAGCTTTGTTCTGGTGGTGAGTTGTTTGATCGCATCATCCAGAGGGGCCACTATACCGAGAGGAAGGCCGCTGAGTTGACCAGAATCATTGTTGGTGTTGTTGAGGCATGCCATTCCCTCGGGGTTATGCACAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTTAATAAAGATGATGATTTCTCTCTTAAAGCAATTGATTTTGGCCTCTCCGTTTTCTTCAAACCCGGTCAAGTTTTCACTGATGTAGTTGGCAGCCCATACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTGTGGACAGCAGGTGTAATACTATACATATTACTTAGTGGCGTGCCACCGTTTTGGGCAGAGACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGACTCAGATCCTTGGCCTCTAATATCTGACAGTGGAAAAGACCTGATTAGAAAGATGCTGTGTTCTCGGCCTTCGGAACGGTTGACTGCTCATCAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCTGACAGGGCACTGGACCCTGCTGTTCTTTCTCGTCTCAAACAATTTTCAGCAATGAATAAGTTAAAGAAGATGGCTTTGCGGGTAATTGCTGAAAGTCTATCTGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGACGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATATAGAAATACGTGATCTTATGGAAGCGGCTGACGTGGACAAAAGTGGAACCATAGATTATGGAGAATTTATTGCTGCAACAGTTCATCTCAACAAACTAGAGCGTGAAGAACATCTCATTGCAGCATTCCAGTATTTTGACAAGGATGGTAGTGGTTATATCACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGTTTTTCTTGAAGATATTATTAGGGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCCATGATGCAAAAAGGCAACCCTGGAATTGGTAGGAGGACTATGCGCAACAGTCTGAATTTAAGCATGAGAGATGCACCAAGTGCTCAATAG 1635 0.4416 MGNTCRGSLKGKYIQGFSQPEDHSKRTTHSDRSDSTKQIPNSAENKNLPLNARKEAIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTSNEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTRIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSRPSERLTAHQVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDIEIRDLMEAADVDKSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFAAMMQKGNPGIGRRTMRNSLNLSMRDAPSAQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02161 544 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509
Cca05g02161 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cca05g02161 544 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Cca05g02161 544 SUPERFAMILY EF-hand 363 520 IPR011992 -
Cca05g02161 544 Gene3D - 349 520 - -
Cca05g02161 544 ProSiteProfiles Protein kinase domain profile. 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02161 544 CDD STKc_CAMK 81 338 - -
Cca05g02161 544 Pfam EF-hand domain pair 457 518 IPR002048 GO:0005509
Cca05g02161 544 Pfam EF-hand domain pair 387 447 IPR002048 GO:0005509
Cca05g02161 544 Gene3D Phosphorylase Kinase; domain 1 83 166 - -
Cca05g02161 544 Pfam Protein kinase domain 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02161 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 43 529 - -
Cca05g02161 544 MobiDBLite consensus disorder prediction 1 48 - -
Cca05g02161 544 SUPERFAMILY Protein kinase-like (PK-like) 65 363 IPR011009 -
Cca05g02161 544 Gene3D Transferase(Phosphotransferase) domain 1 167 348 - -
Cca05g02161 544 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Cca05g02161 544 SMART efh_1 422 450 IPR002048 GO:0005509
Cca05g02161 544 SMART efh_1 492 520 IPR002048 GO:0005509
Cca05g02161 544 SMART efh_1 386 414 IPR002048 GO:0005509
Cca05g02161 544 SMART efh_1 458 486 IPR002048 GO:0005509
Cca05g02161 544 SMART serkin_6 81 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02161 544 MobiDBLite consensus disorder prediction 34 48 - -
Cca05g02161 544 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Cca05g02161 544 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 43 529 - -
Cca05g02161 544 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Cca05g02161 544 ProSiteProfiles EF-hand calcium-binding domain profile. 454 489 IPR002048 GO:0005509
Cca05g02161 544 ProSiteProfiles EF-hand calcium-binding domain profile. 493 523 IPR002048 GO:0005509
Cca05g02161 544 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
Cca05g02161 544 ProSitePatterns EF-hand calcium-binding domain. 431 443 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02161 Cca-Chr5 41364628 41373411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02161 1 540 EF-hand Containing Proteins AT2G17290 84.826 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca05g02161 Pkinase 7.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02161 K13412 - gmx:100778173 1044.26