Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02157 ATGCAGCTTGCCTATCATAGAATCTGGATGAATTTGCTATGCTTTGCATTAACATTAATCTTATTACATGGAGCATCAAGAGAAAGAGCTTCCGGACATGATGATGTCGTCAAAATCGGTGCCATATTCACATTAAAATCTATAAATGGACAAGTTTCCAAAATTGCCATCCAAGCTGCTGAGAAAGATGTGAATTCCGATCCTCGCATCCTGGGGGGACGTAAACTGTCCATAACTATCCATGATTCCAACTTCAATGGTTTTCTTAGCATTATGGGGGCCCTGAAGTTCTTGATGAGGGACACAGTAGCTATAATTGGTCCACAAACTTCAGTAATGGCCCATGTTCTTTCGCATCTTGTAAATGAGCTCCATGTTCCCCTACTGTCCTTCACGGCTTTGGATCCCACCCTAACACCTCTCCAGTATCCTTATTTTGTCCAAACAGCCCCCAGCGATCAGTTCCAGATGACTGCAGTAGCGGACATGATTAGTTATTATGGTTGGAGAGAAGTCATAGCAGTATTCAGTGATGATGATCAGAGTCGAAACGGCATAACTGTATTGGGGGATAAGCTTGCGGCCAAACGATGTAAGTTATCTTACAAAGCAGCACTGCCCCCTGATCCAACCGCCACTCCGAGAGATGTTACTAGTCAGTTAGTGAATATTATGAGTATGGAAGCTCGAGTAATCGTTTTACACACCTACGCAAATACAGGTCTCTTAGTTTTTGACGTGGCTAAAAAACTAGGAATGATGAGCAAAGGGTATGTCTGGATAGCTACTGCTTGGTTATCAACTGTTTTAGATTCCACTTCTGTTTCACTACCTTCAAATACTTCTAACTCAATTCAAGGAGTTCTTACTCTTCGCCCTCACACCCCTCAATCTAGAAAAAAAGAGGCATTTATCTCAAGGTGGAAACACATAAGTAATGGCACAATTGGGTTAAATCCATACGGACTCTATGCATATGATTCTGTTTGGATGATTGCTCAGGCACTAAGATTATTTTATGATCAGAATGGTACCATTTCATTCTCTAATAACACAAATTTAAGTGGTACGAGGGAAGAGACTCTGGATCTTGGTGCTTTGAGCGTTTTTGATGGAGGAAAACAGTTACTTGATAACATATTGCGCATTAATATGACTGGATTGACTGGACCTATTCAATTTGGTTCAGATAGATCTCCTCCACATCCATCATATGACATCCTTAATGTAATTACTTCAGGTTATAGGAGAATCGGTTACTGGTCTAATTACTCTGGCCTCTCTGTAATAAACCCTGAGAAACTTCTCGCAAAGCCTGCCAATCGTTCAATTTCAAGTCAGCATCTAAACCATGTGATATGGCCCGGAAATACAATAGAAAAGCCTCGTGGATGGGTTTTCCCAAATAATGGGAGGCAACTGAGAATTGGAGTCCCCAAGAGAGTTAGTTATCGAGACATGGTCTCACAAATAAATGGCACCAATGCAGTTCAAGGATATTGCATAGATATATTCCTAGCCGCCATAAAATTACTTCCATATGCAGTTCAATATAAGTTCATTCTGTTTGGAAATGGACTCCAGAACCCAAGCTACTATGATCTTGTCAACATGGTTGCTTCTGATGTTTTTGATGCTGCCATAGGTGACATTGCTATTGTCACTGACCGAACAAGGATTGTGGATTTTACTCAGCCATATATAGAGTCCGGGCTAGTTGTGGTTGCTCCAGTAAAAAAATTGAAGTCAAGTGCTTGGGCTTTCTTGCGACCATTTACCCCAATGATGTGGGGTGTCACTGCATTTTTTTTCCTTCTTGTTGGAGCAGTGGTGTGGATTCTTGAACACAGAACAAATGATGAGTTTCGGGGGCCGCCAAAGGAACAGATTGTTACAGTTCTTTGGTTTAGTTTCTCAACTATGTTCTTTGCGCACAGAGAAAACACAGTTAGTCCACTTGGTCGAGTTGTATTGATAATCTGGCTTTTTGTGGTTCTGATAATCAACTCAAGCTACACTGCAAGTTTGACATCAATTCTCACTGTGCAGCAGCTGTCTTCACCCATAACAGGAATTAATAGCTTGATATCTAGCAGCGAACGTATAGGGTATCAAGTTGGCTCATTTGCTGCAAACTATCTGACTGAGGAACTCAACATCCCCAAACATAGACTCTATTCTCTTGGCTCACCAGAAGAATATGCTGATGCCCTTGAAAAGGGAACTGTTGCAGCTGTGGTGGATGAACGACCCTATGTAGAACTCTTCCTTTCAAACCATTGCAAATTCTCAATTAGGGGCCAAGATTTCACCAAAAGTGGATGGGGATTTGCATTCCCGAGGGACTCTCCTCTTGCAATTGATATGTCAACTGCCATTCTAACTCTATCTGAGAATGGAGAACTTCAGAGGATCCATGAAAAATGGCTTTCAAAAAGAACTTGTGGTTTTCACAGTAGTGAGAATGAACAGCTTCAATTTAATAGCTTCAGGGGTCTGTTTCTAATATGCGGGATAACATGTGTCCTGGCGCTTCTTATATACTTTTTCACAATGTTACGCCAATTCAGTAAAAAATCTCCTCAAAAAGCTGGTCCTTCTAATCGCTGCACTTCACGTTCTGCACGCATCCAGACATTTCTACATTTTGTTGATGAAAAAGAAGAGAAGAAGTTGAAAAGAAAACTTGAAGATATTTCCTCAAATAATTATAGCAGGGAATATCGTTTGAGGAGCATATCCAAGAGAGTACAAGTGGACATTTCTCAAGAGGCTCCCAGTAGTTAA 2787 0.4101 MQLAYHRIWMNLLCFALTLILLHGASRERASGHDDVVKIGAIFTLKSINGQVSKIAIQAAEKDVNSDPRILGGRKLSITIHDSNFNGFLSIMGALKFLMRDTVAIIGPQTSVMAHVLSHLVNELHVPLLSFTALDPTLTPLQYPYFVQTAPSDQFQMTAVADMISYYGWREVIAVFSDDDQSRNGITVLGDKLAAKRCKLSYKAALPPDPTATPRDVTSQLVNIMSMEARVIVLHTYANTGLLVFDVAKKLGMMSKGYVWIATAWLSTVLDSTSVSLPSNTSNSIQGVLTLRPHTPQSRKKEAFISRWKHISNGTIGLNPYGLYAYDSVWMIAQALRLFYDQNGTISFSNNTNLSGTREETLDLGALSVFDGGKQLLDNILRINMTGLTGPIQFGSDRSPPHPSYDILNVITSGYRRIGYWSNYSGLSVINPEKLLAKPANRSISSQHLNHVIWPGNTIEKPRGWVFPNNGRQLRIGVPKRVSYRDMVSQINGTNAVQGYCIDIFLAAIKLLPYAVQYKFILFGNGLQNPSYYDLVNMVASDVFDAAIGDIAIVTDRTRIVDFTQPYIESGLVVVAPVKKLKSSAWAFLRPFTPMMWGVTAFFFLLVGAVVWILEHRTNDEFRGPPKEQIVTVLWFSFSTMFFAHRENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGINSLISSSERIGYQVGSFAANYLTEELNIPKHRLYSLGSPEEYADALEKGTVAAVVDERPYVELFLSNHCKFSIRGQDFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHEKWLSKRTCGFHSSENEQLQFNSFRGLFLICGITCVLALLIYFFTMLRQFSKKSPQKAGPSNRCTSRSARIQTFLHFVDEKEEKKLKRKLEDISSNNYSREYRLRSISKRVQVDISQEAPSS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02157 928 Pfam Ligand-gated ion channel 812 840 IPR001320 GO:0015276|GO:0016020
Cca05g02157 928 Gene3D - 774 809 - -
Cca05g02157 928 Gene3D - 476 584 - -
Cca05g02157 928 CDD PBP1_GABAb_receptor_plant 38 429 IPR044440 -
Cca05g02157 928 CDD GluR_Plant 472 810 - -
Cca05g02157 928 Gene3D - 585 718 - -
Cca05g02157 928 SUPERFAMILY Periplasmic binding protein-like I 31 466 IPR028082 -
Cca05g02157 928 Pfam Bacterial extracellular solute-binding proteins, family 3 492 811 IPR001638 -
Cca05g02157 928 Gene3D - 742 773 - -
Cca05g02157 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 919 - -
Cca05g02157 928 Gene3D - 55 402 - -
Cca05g02157 928 SMART GluR_14 473 812 IPR001320 GO:0015276|GO:0016020
Cca05g02157 928 PIRSF IGluLR_plant 4 927 IPR017103 -
Cca05g02157 928 SUPERFAMILY Periplasmic binding protein-like II 451 812 - -
Cca05g02157 928 Pfam Receptor family ligand binding region 55 411 IPR001828 -
Cca05g02157 928 PANTHER GLUTAMATE RECEPTOR 3.6 22 919 - -
Cca05g02157 928 SUPERFAMILY MFS general substrate transporter 591 857 IPR036259 -
Cca05g02157 928 Gene3D - 152 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02157 Cca-Chr5 41269225 41273247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02157 12 905 Ion Channels AT2G17260 61.742 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02157 K05387 - gmx:100793969 1362.05