Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02154 ATGGGAAATTGCTGGGGTTCTCGACCTCACAACCCAACCCCAACAACCACCGGTAACCTTAGTACAGCTACACCGGGGACATCTCAGTCCATCAGCAGCAGCAGctatactactactacaacaactacaaccaccactacttcttctGGAAGTGGGAACAGCTCCATAAATAGCAAGTTCTCCGTGTCCAGCGGTGTTCAACCTTATTCAAATGGACAGATCTTACCTACCTCTAATTTGAGGGTCTTCACTTTTGCGGAGTTGAGGGCTGCAACTAGGAATTTCAGGGCTGATACAGTGCTTGGGGAGGGAGGGTTTGGAAAAGTTTTCAAGGGTTGGCTTGAAGACAAGACCTCGTCAAAGGCTGGGGGAAGTGGAGCAGTCATAGCCGTCAAAAAATTGAACTCCGAAAGCGTACAAGGAGTTGAGGAGTGGCAGTCCGAAGTACATTTTCTAGGACGCCTTTCTCATCCTAATCTTGTTAAGCTGTTGGGATACTGTTTTGAGGACCCAGAGCTTCTTCTTGTCTATGAATTTATGCAAAAGGGCAGTTTGGAAAACCATCTATTTGGAAGGGGCTCTGCTGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGCAGCTCGTGGCCTTGCATTCTTGCACACATCCGAGAAAGTAATTTACAGAGACTTCAAGGCCTCCAATATATTGCTTGATGGGTCTTATAATgcaaagatatcagactttggcttggcaaaattgggtccttcagctagtcaatcgcacgtgaccacaagggtgatgggcacatacggttatgcagctcctgagtatGTGGCCACAGGGCATCTATATGTAAAGAGTGATGTATATGGGTTTGGAGTGGTTTTGGTGGAGATACTAACAGGGCTACGAGCACTTGATCCCAACCGTCCAAGTGGGCAACATAATCTAACAGAGTGGGTCAAACCATACCTGTATGAGAGAAGAAAATTGAAGAGCATTATGGATTCTCGTTTGGAAGGGAAATTTCCATCGAAAGCAGCATTTCGTATAGCTCAGCTTGCTTTGAAATGTATTGCATCTGAGCCCAAACAGCGGCCATCAATGAAGGAAGTTTTGGAGAGTTTGGAGCGAATTCAAACTGCGAATGAGAAACCTGCAGAGCCTAAATTCCGCTCCACTAATACCCGTCAAGCTCACCAGGCTGTGCACCATCGTTCTCCACTTCAGGACAGTAGTTACTAG 1242 0.409 MGNCWGSRPHNPTPTTTGNLSTATPGTSQSISSSSYTTTTTTTTTTTSSGSGNSSINSKFSVSSGVQPYSNGQILPTSNLRVFTFAELRAATRNFRADTVLGEGGFGKVFKGWLEDKTSSKAGGSGAVIAVKKLNSESVQGVEEWQSEVHFLGRLSHPNLVKLLGYCFEDPELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDPNRPSGQHNLTEWVKPYLYERRKLKSIMDSRLEGKFPSKAAFRIAQLALKCIASEPKQRPSMKEVLESLERIQTANEKPAEPKFRSTNTRQAHQAVHHRSPLQDSSY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02154 413 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g02154 413 PANTHER BNAA09G08980D PROTEIN 19 406 - -
Cca05g02154 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Cca05g02154 413 SUPERFAMILY Protein kinase-like (PK-like) 74 377 IPR011009 -
Cca05g02154 413 PANTHER OS01G0588500 PROTEIN-RELATED 19 406 - -
Cca05g02154 413 CDD STKc_IRAK 101 378 - -
Cca05g02154 413 MobiDBLite consensus disorder prediction 367 413 - -
Cca05g02154 413 MobiDBLite consensus disorder prediction 1 55 - -
Cca05g02154 413 Gene3D Transferase(Phosphotransferase) domain 1 180 403 - -
Cca05g02154 413 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Cca05g02154 413 Pfam Protein tyrosine and serine/threonine kinase 98 375 IPR001245 GO:0004672|GO:0006468
Cca05g02154 413 Gene3D Phosphorylase Kinase; domain 1 79 179 - -
Cca05g02154 413 MobiDBLite consensus disorder prediction 367 384 - -
Cca05g02154 413 MobiDBLite consensus disorder prediction 386 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02154 Cca-Chr5 41235438 41238674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02154 81 394 Receptor kinase-like Gene Family AT4G02010 49.057 6.72e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca05g02154 PK_Tyr_Ser-Thr 6.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02154 - - vun:114194495 684.1